Hb_103790_010

Information

Type -
Description -
Location Contig103790: 639-3573
Sequence    

Annotation

kegg
ID vvi:100243779
description pre-mRNA-processing protein 40A
nr
ID XP_012068173.1
description PREDICTED: pre-mRNA-processing protein 40A isoform X4 [Jatropha curcas]
swissprot
ID B6EUA9
description Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A PE=1 SV=1
trembl
ID A0A067KZF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15993 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01409: 2567-2845
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103790_010 0.0 - - PREDICTED: pre-mRNA-processing protein 40A isoform X4 [Jatropha curcas]
2 Hb_068804_080 0.2175671034 - - PREDICTED: protein BRICK 1 [Jatropha curcas]
3 Hb_006541_090 0.2225056369 - - hypothetical protein VITISV_020777 [Vitis vinifera]
4 Hb_000264_290 0.2270985514 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha curcas]
5 Hb_160203_010 0.2361077236 - - -
6 Hb_007136_020 0.2393631932 - - PREDICTED: oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic [Populus euphratica]
7 Hb_001300_050 0.2412360196 - - -
8 Hb_156526_010 0.2421958674 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
9 Hb_008667_040 0.2506242175 - - glycerol-3-phosphate transporter family protein [Populus trichocarpa]
10 Hb_002141_020 0.2514041788 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
11 Hb_003038_220 0.2515862429 - - eukaryotic translation initiation factor 2 gamma subunit, putative [Ricinus communis]
12 Hb_116638_010 0.2542521036 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007123_060 0.2545575311 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
14 Hb_000363_330 0.2561760659 - - -
15 Hb_000253_030 0.2622062072 - - hypothetical protein JCGZ_23039 [Jatropha curcas]
16 Hb_000302_160 0.2667227899 - - PREDICTED: uncharacterized protein LOC105648403 [Jatropha curcas]
17 Hb_002045_140 0.2671838542 - - histone acetyltransferase, partial [Triticum aestivum]
18 Hb_000327_290 0.2698033462 - - Histone H4 [Triticum urartu]
19 Hb_002084_010 0.2711015693 - - hypothetical protein VITISV_017990 [Vitis vinifera]
20 Hb_015354_010 0.2797955886 - - PREDICTED: B2 protein [Jatropha curcas]

Gene co-expression network

sample Hb_103790_010 Hb_103790_010 Hb_068804_080 Hb_068804_080 Hb_103790_010--Hb_068804_080 Hb_006541_090 Hb_006541_090 Hb_103790_010--Hb_006541_090 Hb_000264_290 Hb_000264_290 Hb_103790_010--Hb_000264_290 Hb_160203_010 Hb_160203_010 Hb_103790_010--Hb_160203_010 Hb_007136_020 Hb_007136_020 Hb_103790_010--Hb_007136_020 Hb_001300_050 Hb_001300_050 Hb_103790_010--Hb_001300_050 Hb_134488_010 Hb_134488_010 Hb_068804_080--Hb_134488_010 Hb_068804_080--Hb_160203_010 Hb_068804_080--Hb_007136_020 Hb_004570_050 Hb_004570_050 Hb_068804_080--Hb_004570_050 Hb_182249_010 Hb_182249_010 Hb_068804_080--Hb_182249_010 Hb_010068_100 Hb_010068_100 Hb_006541_090--Hb_010068_100 Hb_136765_010 Hb_136765_010 Hb_006541_090--Hb_136765_010 Hb_000253_030 Hb_000253_030 Hb_006541_090--Hb_000253_030 Hb_068922_010 Hb_068922_010 Hb_006541_090--Hb_068922_010 Hb_000327_290 Hb_000327_290 Hb_006541_090--Hb_000327_290 Hb_000302_130 Hb_000302_130 Hb_000264_290--Hb_000302_130 Hb_007123_060 Hb_007123_060 Hb_000264_290--Hb_007123_060 Hb_012120_030 Hb_012120_030 Hb_000264_290--Hb_012120_030 Hb_008667_040 Hb_008667_040 Hb_000264_290--Hb_008667_040 Hb_188209_010 Hb_188209_010 Hb_000264_290--Hb_188209_010 Hb_149714_010 Hb_149714_010 Hb_000264_290--Hb_149714_010 Hb_000996_180 Hb_000996_180 Hb_160203_010--Hb_000996_180 Hb_000152_670 Hb_000152_670 Hb_160203_010--Hb_000152_670 Hb_015354_010 Hb_015354_010 Hb_160203_010--Hb_015354_010 Hb_170532_010 Hb_170532_010 Hb_160203_010--Hb_170532_010 Hb_002783_010 Hb_002783_010 Hb_160203_010--Hb_002783_010 Hb_124961_010 Hb_124961_010 Hb_160203_010--Hb_124961_010 Hb_007136_020--Hb_124961_010 Hb_003297_020 Hb_003297_020 Hb_007136_020--Hb_003297_020 Hb_101020_010 Hb_101020_010 Hb_007136_020--Hb_101020_010 Hb_007136_020--Hb_170532_010 Hb_006816_340 Hb_006816_340 Hb_007136_020--Hb_006816_340 Hb_070385_010 Hb_070385_010 Hb_007136_020--Hb_070385_010 Hb_001300_050--Hb_007136_020 Hb_130134_020 Hb_130134_020 Hb_001300_050--Hb_130134_020 Hb_001300_050--Hb_006816_340 Hb_002291_040 Hb_002291_040 Hb_001300_050--Hb_002291_040 Hb_000003_180 Hb_000003_180 Hb_001300_050--Hb_000003_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.142157 0.598974 0.238094 0.364201 0.204264 0.918239
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.201951 0.39679 0 0 0

CAGE analysis