Hb_103832_030

Information

Type -
Description -
Location Contig103832: 21002-21880
Sequence    

Annotation

kegg
ID tcc:TCM_009998
description DNA/RNA polymerases superfamily protein
nr
ID XP_012479950.1
description PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NAW6
description Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial-like protein OS=Gossypium arboreum GN=F383_13104 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103832_030 0.0 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
2 Hb_172503_010 0.0007977192 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
3 Hb_083103_030 0.0038396717 - - putative retrotransposon protein [Malus domestica]
4 Hb_115472_010 0.0158429807 - - -
5 Hb_002740_020 0.0206668169 - - -
6 Hb_022137_030 0.0292924781 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
7 Hb_001995_020 0.0685644926 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
8 Hb_036790_010 0.0847562235 - - PREDICTED: GDSL esterase/lipase 1-like [Jatropha curcas]
9 Hb_001369_280 0.1049159911 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like isoform X3 [Solanum tuberosum]
10 Hb_012368_060 0.1114143299 - - -
11 Hb_011457_060 0.1118270826 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
12 Hb_001999_110 0.1128386164 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
13 Hb_000635_120 0.1129542223 - - -
14 Hb_035492_010 0.1164941094 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
15 Hb_000496_090 0.117377848 - - PREDICTED: inhibitor of trypsin and hageman factor-like [Gossypium raimondii]
16 Hb_010267_010 0.1374046594 - - -
17 Hb_010120_010 0.138286864 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
18 Hb_001369_330 0.1389438471 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004881_110 0.1390165031 - - -
20 Hb_000265_180 0.1408174964 - - Alpha/beta-Hydrolases superfamily protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_103832_030 Hb_103832_030 Hb_172503_010 Hb_172503_010 Hb_103832_030--Hb_172503_010 Hb_083103_030 Hb_083103_030 Hb_103832_030--Hb_083103_030 Hb_115472_010 Hb_115472_010 Hb_103832_030--Hb_115472_010 Hb_002740_020 Hb_002740_020 Hb_103832_030--Hb_002740_020 Hb_022137_030 Hb_022137_030 Hb_103832_030--Hb_022137_030 Hb_001995_020 Hb_001995_020 Hb_103832_030--Hb_001995_020 Hb_172503_010--Hb_083103_030 Hb_172503_010--Hb_115472_010 Hb_172503_010--Hb_002740_020 Hb_172503_010--Hb_022137_030 Hb_172503_010--Hb_001995_020 Hb_083103_030--Hb_115472_010 Hb_083103_030--Hb_002740_020 Hb_083103_030--Hb_022137_030 Hb_083103_030--Hb_001995_020 Hb_115472_010--Hb_002740_020 Hb_115472_010--Hb_022137_030 Hb_115472_010--Hb_001995_020 Hb_002740_020--Hb_022137_030 Hb_036790_010 Hb_036790_010 Hb_002740_020--Hb_036790_010 Hb_022137_030--Hb_036790_010 Hb_001995_020--Hb_002740_020 Hb_001995_020--Hb_022137_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0469224 0 0.0378702 0

CAGE analysis