Hb_103865_010

Information

Type -
Description -
Location Contig103865: 1025-1555
Sequence    

Annotation

kegg
ID rcu:RCOM_0922330
description hypothetical protein
nr
ID ADR71298.1
description hypothetical protein 21 [Hevea brasiliensis]
swissprot
ID -
description -
trembl
ID I3NMR1
description Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01441: 1051-1485
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103865_010 0.0 - - hypothetical protein 21 [Hevea brasiliensis]
2 Hb_003506_070 0.1363826475 - - PREDICTED: calcineurin B-like protein 7 isoform X2 [Jatropha curcas]
3 Hb_000117_060 0.1422394925 - - PREDICTED: uncharacterized protein LOC103949199 [Pyrus x bretschneideri]
4 Hb_005000_300 0.1494977699 transcription factor TF Family: TRAF putative regulatory protein NPR1 [Hevea brasiliensis]
5 Hb_001525_010 0.1533196545 - - PREDICTED: uncharacterized protein LOC105638298 [Jatropha curcas]
6 Hb_001231_080 0.1568341221 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 [Fragaria vesca subsp. vesca]
7 Hb_003224_030 0.1605494157 - - hypothetical protein POPTR_0077s002402g, partial [Populus trichocarpa]
8 Hb_000056_300 0.1639730442 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
9 Hb_006711_070 0.1647995509 - - hypothetical protein RCOM_1336320 [Ricinus communis]
10 Hb_000465_080 0.1667457048 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
11 Hb_000540_110 0.1690562012 - - hypothetical protein PRUPE_ppa000777mg [Prunus persica]
12 Hb_003125_030 0.1691774268 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
13 Hb_006738_050 0.1713482251 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
14 Hb_000175_500 0.173231816 - - PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]
15 Hb_006054_030 0.1738439873 - - PREDICTED: protein GPR107-like [Jatropha curcas]
16 Hb_000836_370 0.1752658566 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
17 Hb_012725_040 0.1759452523 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
18 Hb_000608_280 0.1770377584 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
19 Hb_003078_030 0.1770718663 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
20 Hb_000130_280 0.1783413624 - - PREDICTED: transcription factor GTE3, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_103865_010 Hb_103865_010 Hb_003506_070 Hb_003506_070 Hb_103865_010--Hb_003506_070 Hb_000117_060 Hb_000117_060 Hb_103865_010--Hb_000117_060 Hb_005000_300 Hb_005000_300 Hb_103865_010--Hb_005000_300 Hb_001525_010 Hb_001525_010 Hb_103865_010--Hb_001525_010 Hb_001231_080 Hb_001231_080 Hb_103865_010--Hb_001231_080 Hb_003224_030 Hb_003224_030 Hb_103865_010--Hb_003224_030 Hb_000465_080 Hb_000465_080 Hb_003506_070--Hb_000465_080 Hb_003125_030 Hb_003125_030 Hb_003506_070--Hb_003125_030 Hb_000540_110 Hb_000540_110 Hb_003506_070--Hb_000540_110 Hb_003506_070--Hb_001525_010 Hb_011909_060 Hb_011909_060 Hb_003506_070--Hb_011909_060 Hb_004218_090 Hb_004218_090 Hb_003506_070--Hb_004218_090 Hb_006711_070 Hb_006711_070 Hb_000117_060--Hb_006711_070 Hb_003637_020 Hb_003637_020 Hb_000117_060--Hb_003637_020 Hb_185513_010 Hb_185513_010 Hb_000117_060--Hb_185513_010 Hb_001437_010 Hb_001437_010 Hb_000117_060--Hb_001437_010 Hb_012258_020 Hb_012258_020 Hb_000117_060--Hb_012258_020 Hb_138585_100 Hb_138585_100 Hb_000117_060--Hb_138585_100 Hb_000836_370 Hb_000836_370 Hb_005000_300--Hb_000836_370 Hb_005000_300--Hb_000465_080 Hb_000056_300 Hb_000056_300 Hb_005000_300--Hb_000056_300 Hb_003078_030 Hb_003078_030 Hb_005000_300--Hb_003078_030 Hb_005000_300--Hb_001231_080 Hb_005054_310 Hb_005054_310 Hb_005000_300--Hb_005054_310 Hb_028207_040 Hb_028207_040 Hb_001525_010--Hb_028207_040 Hb_001525_010--Hb_003125_030 Hb_000953_050 Hb_000953_050 Hb_001525_010--Hb_000953_050 Hb_001525_010--Hb_000540_110 Hb_116086_010 Hb_116086_010 Hb_001525_010--Hb_116086_010 Hb_001231_080--Hb_000836_370 Hb_001231_080--Hb_000056_300 Hb_002942_110 Hb_002942_110 Hb_001231_080--Hb_002942_110 Hb_128695_030 Hb_128695_030 Hb_001231_080--Hb_128695_030 Hb_004195_120 Hb_004195_120 Hb_001231_080--Hb_004195_120 Hb_007007_080 Hb_007007_080 Hb_003224_030--Hb_007007_080 Hb_000084_240 Hb_000084_240 Hb_003224_030--Hb_000084_240 Hb_002701_210 Hb_002701_210 Hb_003224_030--Hb_002701_210 Hb_005499_010 Hb_005499_010 Hb_003224_030--Hb_005499_010 Hb_000186_200 Hb_000186_200 Hb_003224_030--Hb_000186_200 Hb_000069_730 Hb_000069_730 Hb_003224_030--Hb_000069_730
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.393 183.533 47.9411 54.766 13.4727 41.7523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.3786 12.1538 37.3995 17.9287 23.7361

CAGE analysis