Hb_103873_010

Information

Type -
Description -
Location Contig103873: 721-7189
Sequence    

Annotation

kegg
ID pop:POPTR_0008s14260g
description POPTRDRAFT_766264; hypothetical protein
nr
ID XP_002311566.2
description hypothetical protein POPTR_0008s14260g [Populus trichocarpa]
swissprot
ID O15050
description TPR and ankyrin repeat-containing protein 1 OS=Homo sapiens GN=TRANK1 PE=2 SV=4
trembl
ID B9HJN9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s14260g PE=4 SV=2
Gene Ontology
ID GO:0005515
description hypothetical protein POPTR_0008s14260g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01442: 1857-1973 , PASA_asmbl_01443: 2746-3525 , PASA_asmbl_01444: 4441-4633 , PASA_asmbl_01446: 5241-7192
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103873_010 0.0 - - hypothetical protein POPTR_0008s14260g [Populus trichocarpa]
2 Hb_002038_060 0.0870447556 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100265010 [Vitis vinifera]
3 Hb_002248_050 0.0914754357 - - PREDICTED: uncharacterized protein LOC105635697 [Jatropha curcas]
4 Hb_002301_320 0.1085829272 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
5 Hb_014067_010 0.1224786925 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
6 Hb_001999_060 0.1231448418 - - hypothetical protein POPTR_0009s05000g [Populus trichocarpa]
7 Hb_026048_100 0.1273660946 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
8 Hb_003001_030 0.1322157345 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
9 Hb_006602_020 0.1325054635 - - unknown [Medicago truncatula]
10 Hb_006602_010 0.1329060257 - - PREDICTED: tobamovirus multiplication protein 3 [Jatropha curcas]
11 Hb_014834_120 0.1363731266 - - PREDICTED: uncharacterized protein LOC105632280 [Jatropha curcas]
12 Hb_003497_030 0.1365990195 - - ADP-ribosylation factor, putative [Ricinus communis]
13 Hb_000571_070 0.1382764737 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
14 Hb_032531_030 0.1383791686 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
15 Hb_000907_100 0.1385048718 transcription factor TF Family: zf-HD hypothetical protein POPTR_0012s03770g, partial [Populus trichocarpa]
16 Hb_000700_090 0.139373941 - - protein with unknown function [Ricinus communis]
17 Hb_004126_010 0.1411286873 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
18 Hb_000380_180 0.1426375113 - - kinase, putative [Ricinus communis]
19 Hb_000249_110 0.1429878193 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
20 Hb_002687_050 0.1434287093 - - PREDICTED: uncharacterized protein LOC105782305 isoform X2 [Gossypium raimondii]

Gene co-expression network

sample Hb_103873_010 Hb_103873_010 Hb_002038_060 Hb_002038_060 Hb_103873_010--Hb_002038_060 Hb_002248_050 Hb_002248_050 Hb_103873_010--Hb_002248_050 Hb_002301_320 Hb_002301_320 Hb_103873_010--Hb_002301_320 Hb_014067_010 Hb_014067_010 Hb_103873_010--Hb_014067_010 Hb_001999_060 Hb_001999_060 Hb_103873_010--Hb_001999_060 Hb_026048_100 Hb_026048_100 Hb_103873_010--Hb_026048_100 Hb_003001_030 Hb_003001_030 Hb_002038_060--Hb_003001_030 Hb_004126_010 Hb_004126_010 Hb_002038_060--Hb_004126_010 Hb_002038_060--Hb_014067_010 Hb_009510_030 Hb_009510_030 Hb_002038_060--Hb_009510_030 Hb_002038_060--Hb_001999_060 Hb_002248_050--Hb_002301_320 Hb_000421_190 Hb_000421_190 Hb_002248_050--Hb_000421_190 Hb_002835_170 Hb_002835_170 Hb_002248_050--Hb_002835_170 Hb_006787_040 Hb_006787_040 Hb_002248_050--Hb_006787_040 Hb_000329_600 Hb_000329_600 Hb_002248_050--Hb_000329_600 Hb_001488_100 Hb_001488_100 Hb_002301_320--Hb_001488_100 Hb_002301_320--Hb_002835_170 Hb_000571_070 Hb_000571_070 Hb_002301_320--Hb_000571_070 Hb_002301_320--Hb_003001_030 Hb_014067_010--Hb_004126_010 Hb_000249_110 Hb_000249_110 Hb_014067_010--Hb_000249_110 Hb_138413_010 Hb_138413_010 Hb_014067_010--Hb_138413_010 Hb_002843_160 Hb_002843_160 Hb_014067_010--Hb_002843_160 Hb_005730_020 Hb_005730_020 Hb_014067_010--Hb_005730_020 Hb_014067_010--Hb_009510_030 Hb_002357_040 Hb_002357_040 Hb_001999_060--Hb_002357_040 Hb_003638_030 Hb_003638_030 Hb_001999_060--Hb_003638_030 Hb_001999_060--Hb_026048_100 Hb_000025_480 Hb_000025_480 Hb_001999_060--Hb_000025_480 Hb_026048_100--Hb_003638_030 Hb_066807_010 Hb_066807_010 Hb_026048_100--Hb_066807_010 Hb_006602_020 Hb_006602_020 Hb_026048_100--Hb_006602_020 Hb_000700_090 Hb_000700_090 Hb_026048_100--Hb_000700_090 Hb_000057_060 Hb_000057_060 Hb_026048_100--Hb_000057_060 Hb_000172_400 Hb_000172_400 Hb_026048_100--Hb_000172_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.1438 3.88231 0.958079 2.08487 45.4569 91.5115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.9707 46.3705 77.485 6.98022 4.2529

CAGE analysis