Hb_103942_010

Information

Type -
Description -
Location Contig103942: 2135-2446
Sequence    

Annotation

kegg
ID -
description -
nr
ID CAA72630.1
description rab5A-like protein [Trichinella spiralis]
swissprot
ID -
description -
trembl
ID U6DL35
description RAB5B, member RAS oncogene family (Fragment) OS=Neovison vison GN=F8VVZ0 PE=2 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rabc2a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103942_010 0.0 - - rab5A-like protein [Trichinella spiralis]
2 Hb_008493_020 0.0516713869 - - linamarase [Manihot esculenta]
3 Hb_060416_010 0.0617732052 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009896_010 0.0710309124 - - ABC transporter G family member 15 [Morus notabilis]
5 Hb_053058_010 0.0752974966 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001634_070 0.0755960876 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000002_190 0.0771902898 transcription factor TF Family: ERF Ethylene-responsive transcription factor [Morus notabilis]
8 Hb_000003_520 0.0771902898 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
9 Hb_000005_170 0.0771902898 transcription factor TF Family: bHLH PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Jatropha curcas]
10 Hb_000009_230 0.0771902898 - - hypothetical protein POPTR_0007s12290g [Populus trichocarpa]
11 Hb_000011_110 0.0771902898 - - PREDICTED: uncharacterized protein LOC105631299 [Jatropha curcas]
12 Hb_000012_390 0.0771902898 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000018_070 0.0771902898 - - PREDICTED: amino acid permease 8-like [Jatropha curcas]
14 Hb_000020_130 0.0771902898 - - conidial pigment biosynthesis oxidase Arb2/brown2 [Aspergillus clavatus NRRL 1]
15 Hb_000024_090 0.0771902898 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000025_560 0.0771902898 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_000028_310 0.0771902898 - - PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
18 Hb_000037_140 0.0771902898 - - PREDICTED: uncharacterized protein LOC104586896 [Nelumbo nucifera]
19 Hb_000046_420 0.0771902898 - - hypothetical protein JCGZ_02014 [Jatropha curcas]
20 Hb_000054_180 0.0771902898 - - PREDICTED: uncharacterized protein LOC105636626 [Jatropha curcas]

Gene co-expression network

sample Hb_103942_010 Hb_103942_010 Hb_008493_020 Hb_008493_020 Hb_103942_010--Hb_008493_020 Hb_060416_010 Hb_060416_010 Hb_103942_010--Hb_060416_010 Hb_009896_010 Hb_009896_010 Hb_103942_010--Hb_009896_010 Hb_053058_010 Hb_053058_010 Hb_103942_010--Hb_053058_010 Hb_001634_070 Hb_001634_070 Hb_103942_010--Hb_001634_070 Hb_000002_190 Hb_000002_190 Hb_103942_010--Hb_000002_190 Hb_008493_020--Hb_060416_010 Hb_008493_020--Hb_009896_010 Hb_008493_020--Hb_053058_010 Hb_008493_020--Hb_001634_070 Hb_001322_200 Hb_001322_200 Hb_008493_020--Hb_001322_200 Hb_060416_010--Hb_000002_190 Hb_000003_520 Hb_000003_520 Hb_060416_010--Hb_000003_520 Hb_000005_170 Hb_000005_170 Hb_060416_010--Hb_000005_170 Hb_000009_230 Hb_000009_230 Hb_060416_010--Hb_000009_230 Hb_000011_110 Hb_000011_110 Hb_060416_010--Hb_000011_110 Hb_009896_010--Hb_053058_010 Hb_000637_090 Hb_000637_090 Hb_009896_010--Hb_000637_090 Hb_007677_010 Hb_007677_010 Hb_009896_010--Hb_007677_010 Hb_001956_170 Hb_001956_170 Hb_009896_010--Hb_001956_170 Hb_009896_010--Hb_001634_070 Hb_053058_010--Hb_001634_070 Hb_001597_040 Hb_001597_040 Hb_053058_010--Hb_001597_040 Hb_050786_010 Hb_050786_010 Hb_053058_010--Hb_050786_010 Hb_053058_010--Hb_060416_010 Hb_001634_070--Hb_060416_010 Hb_001634_070--Hb_001597_040 Hb_000027_020 Hb_000027_020 Hb_001634_070--Hb_000027_020 Hb_000002_190--Hb_000003_520 Hb_000002_190--Hb_000005_170 Hb_000002_190--Hb_000009_230 Hb_000002_190--Hb_000011_110 Hb_000012_390 Hb_000012_390 Hb_000002_190--Hb_000012_390 Hb_000018_070 Hb_000018_070 Hb_000002_190--Hb_000018_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 387.564 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 4.6539

CAGE analysis