Hb_104010_010

Information

Type -
Description -
Location Contig104010: 119-1254
Sequence    

Annotation

kegg
ID cic:CICLE_v10033011mg
description hypothetical protein
nr
ID KDP22592.1
description hypothetical protein JCGZ_26423 [Jatropha curcas]
swissprot
ID Q9FED2
description HVA22-like protein e OS=Arabidopsis thaliana GN=HVA22E PE=2 SV=1
trembl
ID A0A067JFH6
description HVA22-like protein OS=Jatropha curcas GN=JCGZ_26423 PE=3 SV=1
Gene Ontology
ID GO:0006950
description hva22-like protein e

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01486: 209-1201
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_104010_010 0.0 - - hypothetical protein JCGZ_26423 [Jatropha curcas]
2 Hb_003050_070 0.1342467871 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001741_090 0.1381132212 rubber biosynthesis Gene Name: SRPP1 RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
4 Hb_001507_070 0.1413279531 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000453_300 0.1496014886 - - latex cystatin [Hevea brasiliensis]
6 Hb_148121_010 0.1533111945 - - conserved hypothetical protein [Ricinus communis]
7 Hb_011004_010 0.1592182117 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
8 Hb_000567_280 0.1659475817 - - PREDICTED: uncharacterized protein At4g06598-like [Populus euphratica]
9 Hb_000310_030 0.1677231967 - - hypothetical protein JCGZ_03883 [Jatropha curcas]
10 Hb_002260_020 0.168163557 - - -
11 Hb_000032_040 0.1684160739 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
12 Hb_003371_100 0.1692510454 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
13 Hb_001035_040 0.1705906951 - - unnamed protein product [Coffea canephora]
14 Hb_000742_270 0.1707709447 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
15 Hb_000563_560 0.1732174816 - - PREDICTED: bidirectional sugar transporter SWEET17 [Jatropha curcas]
16 Hb_000091_100 0.1740605987 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000575_020 0.1777639386 - - PREDICTED: copper-transporting ATPase PAA1, chloroplastic [Jatropha curcas]
18 Hb_080477_060 0.1783696689 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000175_610 0.1807724297 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
20 Hb_000545_170 0.1815494115 - - PREDICTED: putative calcium-transporting ATPase 11, plasma membrane-type isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_104010_010 Hb_104010_010 Hb_003050_070 Hb_003050_070 Hb_104010_010--Hb_003050_070 Hb_001741_090 Hb_001741_090 Hb_104010_010--Hb_001741_090 Hb_001507_070 Hb_001507_070 Hb_104010_010--Hb_001507_070 Hb_000453_300 Hb_000453_300 Hb_104010_010--Hb_000453_300 Hb_148121_010 Hb_148121_010 Hb_104010_010--Hb_148121_010 Hb_011004_010 Hb_011004_010 Hb_104010_010--Hb_011004_010 Hb_000714_010 Hb_000714_010 Hb_003050_070--Hb_000714_010 Hb_003211_050 Hb_003211_050 Hb_003050_070--Hb_003211_050 Hb_000567_280 Hb_000567_280 Hb_003050_070--Hb_000567_280 Hb_010166_020 Hb_010166_020 Hb_003050_070--Hb_010166_020 Hb_149683_010 Hb_149683_010 Hb_003050_070--Hb_149683_010 Hb_001741_090--Hb_148121_010 Hb_001035_040 Hb_001035_040 Hb_001741_090--Hb_001035_040 Hb_000107_070 Hb_000107_070 Hb_001741_090--Hb_000107_070 Hb_002235_230 Hb_002235_230 Hb_001741_090--Hb_002235_230 Hb_001741_090--Hb_149683_010 Hb_002000_110 Hb_002000_110 Hb_001741_090--Hb_002000_110 Hb_000742_270 Hb_000742_270 Hb_001507_070--Hb_000742_270 Hb_001507_070--Hb_011004_010 Hb_003371_100 Hb_003371_100 Hb_001507_070--Hb_003371_100 Hb_001507_070--Hb_148121_010 Hb_000215_180 Hb_000215_180 Hb_001507_070--Hb_000215_180 Hb_000032_040 Hb_000032_040 Hb_001507_070--Hb_000032_040 Hb_012799_020 Hb_012799_020 Hb_000453_300--Hb_012799_020 Hb_000453_300--Hb_001507_070 Hb_000281_230 Hb_000281_230 Hb_000453_300--Hb_000281_230 Hb_004209_030 Hb_004209_030 Hb_000453_300--Hb_004209_030 Hb_000453_300--Hb_003050_070 Hb_148121_010--Hb_000742_270 Hb_148121_010--Hb_001035_040 Hb_001268_080 Hb_001268_080 Hb_148121_010--Hb_001268_080 Hb_148121_010--Hb_000032_040 Hb_011004_010--Hb_000032_040 Hb_000575_020 Hb_000575_020 Hb_011004_010--Hb_000575_020 Hb_011004_010--Hb_000742_270 Hb_011004_010--Hb_003371_100 Hb_000175_610 Hb_000175_610 Hb_011004_010--Hb_000175_610
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.05977 0.118626 0.181957 1.16603 1.58209 1.83116
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.1812 9.61026 6.97097 0.271852 1.20766

CAGE analysis