Hb_104061_020

Information

Type -
Description -
Location Contig104061: 28144-30896
Sequence    

Annotation

kegg
ID rcu:RCOM_0718200
description hypothetical protein
nr
ID XP_012079799.1
description PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
swissprot
ID Q9M358
description UV-stimulated scaffold protein A homolog OS=Arabidopsis thaliana GN=At3g61800 PE=3 SV=1
trembl
ID A0A067K5V8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15357 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01495: 28492-29614 , PASA_asmbl_01497: 30225-30858
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_104061_020 0.0 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
2 Hb_002107_070 0.0443467395 - - hypothetical protein RCOM_1598630 [Ricinus communis]
3 Hb_000579_230 0.0555110934 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
4 Hb_002329_040 0.056210842 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
5 Hb_010053_030 0.0608588091 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
6 Hb_000740_100 0.0610179831 - - calpain, putative [Ricinus communis]
7 Hb_009175_020 0.0627010834 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
8 Hb_000505_020 0.0648286747 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
9 Hb_004235_080 0.0690373685 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
10 Hb_000390_320 0.0690482156 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]
11 Hb_007635_030 0.0690800647 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
12 Hb_028487_010 0.0691016321 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
13 Hb_001623_480 0.0695370166 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Jatropha curcas]
14 Hb_000010_360 0.0695794026 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
15 Hb_000190_120 0.0697497982 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
16 Hb_000923_080 0.0698992091 - - PREDICTED: eukaryotic translation initiation factor 2A [Jatropha curcas]
17 Hb_017862_020 0.0700737225 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
18 Hb_011173_030 0.070408796 - - pumilio, putative [Ricinus communis]
19 Hb_003952_150 0.0704198805 - - PREDICTED: cactin [Jatropha curcas]
20 Hb_003058_060 0.0707451251 - - PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_104061_020 Hb_104061_020 Hb_002107_070 Hb_002107_070 Hb_104061_020--Hb_002107_070 Hb_000579_230 Hb_000579_230 Hb_104061_020--Hb_000579_230 Hb_002329_040 Hb_002329_040 Hb_104061_020--Hb_002329_040 Hb_010053_030 Hb_010053_030 Hb_104061_020--Hb_010053_030 Hb_000740_100 Hb_000740_100 Hb_104061_020--Hb_000740_100 Hb_009175_020 Hb_009175_020 Hb_104061_020--Hb_009175_020 Hb_002107_070--Hb_002329_040 Hb_000369_130 Hb_000369_130 Hb_002107_070--Hb_000369_130 Hb_001821_090 Hb_001821_090 Hb_002107_070--Hb_001821_090 Hb_028487_010 Hb_028487_010 Hb_002107_070--Hb_028487_010 Hb_007635_030 Hb_007635_030 Hb_002107_070--Hb_007635_030 Hb_012395_140 Hb_012395_140 Hb_000579_230--Hb_012395_140 Hb_002815_030 Hb_002815_030 Hb_000579_230--Hb_002815_030 Hb_000395_070 Hb_000395_070 Hb_000579_230--Hb_000395_070 Hb_009270_020 Hb_009270_020 Hb_000579_230--Hb_009270_020 Hb_004676_010 Hb_004676_010 Hb_000579_230--Hb_004676_010 Hb_027380_140 Hb_027380_140 Hb_002329_040--Hb_027380_140 Hb_002329_040--Hb_000740_100 Hb_002329_040--Hb_012395_140 Hb_001195_320 Hb_001195_320 Hb_002329_040--Hb_001195_320 Hb_000183_020 Hb_000183_020 Hb_002329_040--Hb_000183_020 Hb_000923_080 Hb_000923_080 Hb_010053_030--Hb_000923_080 Hb_000505_020 Hb_000505_020 Hb_010053_030--Hb_000505_020 Hb_001235_140 Hb_001235_140 Hb_010053_030--Hb_001235_140 Hb_000648_100 Hb_000648_100 Hb_010053_030--Hb_000648_100 Hb_004096_070 Hb_004096_070 Hb_010053_030--Hb_004096_070 Hb_000261_030 Hb_000261_030 Hb_000740_100--Hb_000261_030 Hb_000740_100--Hb_000395_070 Hb_008024_030 Hb_008024_030 Hb_000740_100--Hb_008024_030 Hb_011173_030 Hb_011173_030 Hb_000740_100--Hb_011173_030 Hb_009486_180 Hb_009486_180 Hb_009175_020--Hb_009486_180 Hb_009175_020--Hb_002329_040 Hb_000190_120 Hb_000190_120 Hb_009175_020--Hb_000190_120 Hb_000429_220 Hb_000429_220 Hb_009175_020--Hb_000429_220 Hb_123903_010 Hb_123903_010 Hb_009175_020--Hb_123903_010 Hb_009175_020--Hb_002107_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.58877 9.49156 5.35562 4.82561 10.7529 9.43299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.58914 4.65661 5.18352 10.3703 5.97238

CAGE analysis