Hb_104265_030

Information

Type -
Description -
Location Contig104265: 22316-23629
Sequence    

Annotation

kegg
ID pop:POPTR_0001s31230g
description POPTRDRAFT_549914; hypothetical protein
nr
ID XP_002298728.1
description hypothetical protein POPTR_0001s31230g [Populus trichocarpa]
swissprot
ID Q96MB7
description Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1 PE=1 SV=1
trembl
ID B9GHA8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s31230g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_104265_030 0.0 - - hypothetical protein POPTR_0001s31230g [Populus trichocarpa]
2 Hb_029223_050 0.0943061467 - - PREDICTED: uncharacterized protein LOC105642267 isoform X1 [Jatropha curcas]
3 Hb_003125_030 0.0984141964 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
4 Hb_000123_350 0.1038094349 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
5 Hb_012226_010 0.1043345681 - - PREDICTED: protein DGCR14 [Jatropha curcas]
6 Hb_026198_040 0.1073459697 - - PREDICTED: uncharacterized protein LOC105628901 [Jatropha curcas]
7 Hb_000896_060 0.1080538644 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_001511_110 0.1116036702 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
9 Hb_007813_030 0.1141784115 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At4g19050 [Jatropha curcas]
10 Hb_030827_060 0.116585544 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-2b [Jatropha curcas]
11 Hb_000327_280 0.1168366919 - - PREDICTED: uncharacterized protein LOC105635045 isoform X1 [Jatropha curcas]
12 Hb_052764_060 0.1168732976 - - XPA-binding protein, putative [Ricinus communis]
13 Hb_014834_060 0.1176366488 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
14 Hb_000832_320 0.1176987081 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
15 Hb_009028_010 0.11782306 - - PREDICTED: probable disease resistance protein At1g12280 [Jatropha curcas]
16 Hb_000189_100 0.1180295913 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
17 Hb_000260_640 0.1184581156 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
18 Hb_144744_010 0.1208860248 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
19 Hb_001141_370 0.1221678182 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
20 Hb_000544_060 0.122178458 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]

Gene co-expression network

sample Hb_104265_030 Hb_104265_030 Hb_029223_050 Hb_029223_050 Hb_104265_030--Hb_029223_050 Hb_003125_030 Hb_003125_030 Hb_104265_030--Hb_003125_030 Hb_000123_350 Hb_000123_350 Hb_104265_030--Hb_000123_350 Hb_012226_010 Hb_012226_010 Hb_104265_030--Hb_012226_010 Hb_026198_040 Hb_026198_040 Hb_104265_030--Hb_026198_040 Hb_000896_060 Hb_000896_060 Hb_104265_030--Hb_000896_060 Hb_000340_110 Hb_000340_110 Hb_029223_050--Hb_000340_110 Hb_001511_110 Hb_001511_110 Hb_029223_050--Hb_001511_110 Hb_029223_050--Hb_026198_040 Hb_001141_370 Hb_001141_370 Hb_029223_050--Hb_001141_370 Hb_000544_060 Hb_000544_060 Hb_029223_050--Hb_000544_060 Hb_003125_030--Hb_012226_010 Hb_003506_070 Hb_003506_070 Hb_003125_030--Hb_003506_070 Hb_000540_120 Hb_000540_120 Hb_003125_030--Hb_000540_120 Hb_001525_010 Hb_001525_010 Hb_003125_030--Hb_001525_010 Hb_000327_280 Hb_000327_280 Hb_003125_030--Hb_000327_280 Hb_000123_350--Hb_000896_060 Hb_002485_040 Hb_002485_040 Hb_000123_350--Hb_002485_040 Hb_014834_060 Hb_014834_060 Hb_000123_350--Hb_014834_060 Hb_000526_060 Hb_000526_060 Hb_000123_350--Hb_000526_060 Hb_003060_090 Hb_003060_090 Hb_000123_350--Hb_003060_090 Hb_012082_010 Hb_012082_010 Hb_000123_350--Hb_012082_010 Hb_012226_010--Hb_000340_110 Hb_012226_010--Hb_029223_050 Hb_012226_010--Hb_001511_110 Hb_012226_010--Hb_026198_040 Hb_026198_040--Hb_000340_110 Hb_026198_040--Hb_001141_370 Hb_026198_040--Hb_000544_060 Hb_030827_060 Hb_030827_060 Hb_026198_040--Hb_030827_060 Hb_000832_320 Hb_000832_320 Hb_026198_040--Hb_000832_320 Hb_000896_060--Hb_000526_060 Hb_000896_060--Hb_014834_060 Hb_000117_070 Hb_000117_070 Hb_000896_060--Hb_000117_070 Hb_044653_020 Hb_044653_020 Hb_000896_060--Hb_044653_020 Hb_012368_100 Hb_012368_100 Hb_000896_060--Hb_012368_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.36666 12.8523 1.59182 3.5832 5.34816 4.1887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.6029 2.03471 1.98118 2.41845 3.27762

CAGE analysis