Hb_104265_040

Information

Type -
Description -
Location Contig104265: 28461-32512
Sequence    

Annotation

kegg
ID rcu:RCOM_1604360
description hypothetical protein
nr
ID XP_002526587.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SKR8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1604360 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01560: 29097-29416 , PASA_asmbl_01561: 29590-32366
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_104265_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000210_120 0.0886828195 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
3 Hb_001222_080 0.0950170424 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
4 Hb_000922_040 0.0959013105 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
5 Hb_003098_020 0.0975103445 - - 40S ribosomal protein S5B [Hevea brasiliensis]
6 Hb_005307_050 0.0992441475 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
7 Hb_000103_270 0.1012709018 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Fragaria vesca subsp. vesca]
8 Hb_008695_050 0.1091328392 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005137_060 0.1096126585 - - -
10 Hb_002631_180 0.1098608898 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
11 Hb_005914_170 0.1109284336 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
12 Hb_000136_350 0.11152282 - - PREDICTED: 40S ribosomal protein S5 [Nomascus leucogenys]
13 Hb_011344_190 0.1138190124 - - PREDICTED: maspardin [Jatropha curcas]
14 Hb_186982_040 0.1142554561 - - hypothetical protein PHAVU_003G089200g [Phaseolus vulgaris]
15 Hb_000574_130 0.114749907 - - calcineurin-like protein [Hevea brasiliensis]
16 Hb_011344_120 0.1172836082 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
17 Hb_007928_030 0.1190538107 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
18 Hb_003633_050 0.1199734565 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
19 Hb_001410_060 0.1205431485 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
20 Hb_033642_080 0.1216236733 - - V-type proton ATPase subunit E [Hevea brasiliensis]

Gene co-expression network

sample Hb_104265_040 Hb_104265_040 Hb_000210_120 Hb_000210_120 Hb_104265_040--Hb_000210_120 Hb_001222_080 Hb_001222_080 Hb_104265_040--Hb_001222_080 Hb_000922_040 Hb_000922_040 Hb_104265_040--Hb_000922_040 Hb_003098_020 Hb_003098_020 Hb_104265_040--Hb_003098_020 Hb_005307_050 Hb_005307_050 Hb_104265_040--Hb_005307_050 Hb_000103_270 Hb_000103_270 Hb_104265_040--Hb_000103_270 Hb_005914_170 Hb_005914_170 Hb_000210_120--Hb_005914_170 Hb_000210_120--Hb_000103_270 Hb_000210_120--Hb_003098_020 Hb_007928_030 Hb_007928_030 Hb_000210_120--Hb_007928_030 Hb_011344_120 Hb_011344_120 Hb_000210_120--Hb_011344_120 Hb_000136_350 Hb_000136_350 Hb_000210_120--Hb_000136_350 Hb_011344_190 Hb_011344_190 Hb_001222_080--Hb_011344_190 Hb_001222_080--Hb_000922_040 Hb_000046_350 Hb_000046_350 Hb_001222_080--Hb_000046_350 Hb_004837_160 Hb_004837_160 Hb_001222_080--Hb_004837_160 Hb_089032_030 Hb_089032_030 Hb_001222_080--Hb_089032_030 Hb_008232_010 Hb_008232_010 Hb_001222_080--Hb_008232_010 Hb_005269_080 Hb_005269_080 Hb_000922_040--Hb_005269_080 Hb_000384_120 Hb_000384_120 Hb_000922_040--Hb_000384_120 Hb_002016_080 Hb_002016_080 Hb_000922_040--Hb_002016_080 Hb_000701_100 Hb_000701_100 Hb_000922_040--Hb_000701_100 Hb_001410_060 Hb_001410_060 Hb_000922_040--Hb_001410_060 Hb_005305_150 Hb_005305_150 Hb_003098_020--Hb_005305_150 Hb_186982_040 Hb_186982_040 Hb_003098_020--Hb_186982_040 Hb_003098_020--Hb_000136_350 Hb_000896_040 Hb_000896_040 Hb_003098_020--Hb_000896_040 Hb_003098_020--Hb_005914_170 Hb_000808_190 Hb_000808_190 Hb_005307_050--Hb_000808_190 Hb_005307_050--Hb_007928_030 Hb_005307_050--Hb_186982_040 Hb_000212_290 Hb_000212_290 Hb_005307_050--Hb_000212_290 Hb_008695_050 Hb_008695_050 Hb_005307_050--Hb_008695_050 Hb_001242_140 Hb_001242_140 Hb_005307_050--Hb_001242_140 Hb_009687_010 Hb_009687_010 Hb_000103_270--Hb_009687_010 Hb_000096_160 Hb_000096_160 Hb_000103_270--Hb_000096_160 Hb_000103_270--Hb_005914_170 Hb_006698_030 Hb_006698_030 Hb_000103_270--Hb_006698_030 Hb_000103_270--Hb_003098_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.426333 0.778642 0.364019 1.69329 0.562344 0.593899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.66019 2.47886 1.24842 1.79988 0.833862

CAGE analysis