Hb_104641_010

Information

Type -
Description -
Location Contig104641: 20-1088
Sequence    

Annotation

kegg
ID pop:POPTR_0005s030202
description hypothetical protein
nr
ID XP_012086191.1
description PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID A0A067JQ32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21104 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01602: 758-993
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_104641_010 0.0 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
2 Hb_001361_010 0.1084590191 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
3 Hb_074672_010 0.1552973733 - - receptor serine/threonine kinase, putative [Ricinus communis]
4 Hb_171974_010 0.1602972304 - - aldo-keto reductase, putative [Ricinus communis]
5 Hb_000433_050 0.1668716375 - - PREDICTED: cell number regulator 1 isoform X1 [Vitis vinifera]
6 Hb_120011_010 0.1720310733 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
7 Hb_000025_490 0.1726734319 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
8 Hb_127372_010 0.1737131093 - - hypothetical protein POPTR_0017s06310g [Populus trichocarpa]
9 Hb_086614_010 0.1750825298 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X1 [Jatropha curcas]
10 Hb_027065_010 0.1770869134 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
11 Hb_004899_010 0.1813808649 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
12 Hb_001405_250 0.1826347948 - - PREDICTED: uncharacterized protein LOC105645451 [Jatropha curcas]
13 Hb_179363_010 0.1829541333 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
14 Hb_008651_010 0.183113749 - - cytochrome P450, putative [Ricinus communis]
15 Hb_012022_020 0.1848505622 transcription factor TF Family: G2-like hypothetical protein POPTR_0006s10190g [Populus trichocarpa]
16 Hb_011622_010 0.1850616421 - - PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
17 Hb_010994_020 0.187140518 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
18 Hb_000959_240 0.1876399071 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
19 Hb_032071_010 0.1876833268 - - hypothetical protein EUGRSUZ_J02969 [Eucalyptus grandis]
20 Hb_001310_010 0.1882058949 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type [Jatropha curcas]

Gene co-expression network

sample Hb_104641_010 Hb_104641_010 Hb_001361_010 Hb_001361_010 Hb_104641_010--Hb_001361_010 Hb_074672_010 Hb_074672_010 Hb_104641_010--Hb_074672_010 Hb_171974_010 Hb_171974_010 Hb_104641_010--Hb_171974_010 Hb_000433_050 Hb_000433_050 Hb_104641_010--Hb_000433_050 Hb_120011_010 Hb_120011_010 Hb_104641_010--Hb_120011_010 Hb_000025_490 Hb_000025_490 Hb_104641_010--Hb_000025_490 Hb_127372_010 Hb_127372_010 Hb_001361_010--Hb_127372_010 Hb_027065_010 Hb_027065_010 Hb_001361_010--Hb_027065_010 Hb_001361_010--Hb_074672_010 Hb_086614_010 Hb_086614_010 Hb_001361_010--Hb_086614_010 Hb_116420_050 Hb_116420_050 Hb_001361_010--Hb_116420_050 Hb_074672_010--Hb_120011_010 Hb_077694_010 Hb_077694_010 Hb_074672_010--Hb_077694_010 Hb_006615_060 Hb_006615_060 Hb_074672_010--Hb_006615_060 Hb_000959_240 Hb_000959_240 Hb_074672_010--Hb_000959_240 Hb_017693_040 Hb_017693_040 Hb_074672_010--Hb_017693_040 Hb_001619_140 Hb_001619_140 Hb_074672_010--Hb_001619_140 Hb_002119_030 Hb_002119_030 Hb_171974_010--Hb_002119_030 Hb_067028_010 Hb_067028_010 Hb_171974_010--Hb_067028_010 Hb_003119_030 Hb_003119_030 Hb_171974_010--Hb_003119_030 Hb_000540_090 Hb_000540_090 Hb_171974_010--Hb_000540_090 Hb_001405_250 Hb_001405_250 Hb_171974_010--Hb_001405_250 Hb_171974_010--Hb_000025_490 Hb_179363_010 Hb_179363_010 Hb_000433_050--Hb_179363_010 Hb_008651_010 Hb_008651_010 Hb_000433_050--Hb_008651_010 Hb_001515_040 Hb_001515_040 Hb_000433_050--Hb_001515_040 Hb_000433_050--Hb_000025_490 Hb_101437_010 Hb_101437_010 Hb_000433_050--Hb_101437_010 Hb_112703_010 Hb_112703_010 Hb_000433_050--Hb_112703_010 Hb_120011_010--Hb_001619_140 Hb_001310_010 Hb_001310_010 Hb_120011_010--Hb_001310_010 Hb_120011_010--Hb_077694_010 Hb_008202_020 Hb_008202_020 Hb_120011_010--Hb_008202_020 Hb_120011_010--Hb_006615_060 Hb_008725_220 Hb_008725_220 Hb_000025_490--Hb_008725_220 Hb_000025_490--Hb_002119_030 Hb_000025_490--Hb_000959_240 Hb_000025_490--Hb_001515_040 Hb_167186_010 Hb_167186_010 Hb_000025_490--Hb_167186_010 Hb_000025_490--Hb_101437_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.125114 4.85268 6.54236 0.357944 0.0213163 0.0200379
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0521038 0.0819571 0 0.197861 0.0836962

CAGE analysis