Hb_104721_010

Information

Type -
Description -
Location Contig104721: 61-603
Sequence    

Annotation

kegg
ID tcc:TCM_009053
description DNA/RNA polymerases superfamily protein
nr
ID XP_012437464.1
description PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_104721_010 0.0 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
2 Hb_186054_010 0.1335396791 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_001344_030 0.2256237896 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_012717_030 0.2372187678 - - hypothetical protein, partial [Pseudomonas fluorescens]
5 Hb_005654_010 0.2472566136 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000757_090 0.2489409559 - - SPla/RYanodine receptor domain-containing protein isoform 3 [Theobroma cacao]
7 Hb_005542_170 0.2623440534 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_005031_010 0.2667319796 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
9 Hb_101624_010 0.2667437434 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
10 Hb_025528_010 0.2679965251 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
11 Hb_156924_020 0.2690144984 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
12 Hb_002249_200 0.2705709084 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
13 Hb_033095_050 0.2728877042 - - hypothetical protein VITISV_038692 [Vitis vinifera]
14 Hb_172665_010 0.2945705334 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_158235_010 0.2946581569 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
16 Hb_001244_030 0.2985735502 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_000445_200 0.3004620747 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
18 Hb_033152_040 0.3006571603 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
19 Hb_002400_430 0.3034206412 - - -
20 Hb_007157_010 0.3046355848 - - -

Gene co-expression network

sample Hb_104721_010 Hb_104721_010 Hb_186054_010 Hb_186054_010 Hb_104721_010--Hb_186054_010 Hb_001344_030 Hb_001344_030 Hb_104721_010--Hb_001344_030 Hb_012717_030 Hb_012717_030 Hb_104721_010--Hb_012717_030 Hb_005654_010 Hb_005654_010 Hb_104721_010--Hb_005654_010 Hb_000757_090 Hb_000757_090 Hb_104721_010--Hb_000757_090 Hb_005542_170 Hb_005542_170 Hb_104721_010--Hb_005542_170 Hb_186054_010--Hb_001344_030 Hb_186054_010--Hb_000757_090 Hb_156924_020 Hb_156924_020 Hb_186054_010--Hb_156924_020 Hb_158235_010 Hb_158235_010 Hb_186054_010--Hb_158235_010 Hb_094852_010 Hb_094852_010 Hb_186054_010--Hb_094852_010 Hb_001344_030--Hb_000757_090 Hb_001344_030--Hb_156924_020 Hb_001344_030--Hb_158235_010 Hb_001344_030--Hb_094852_010 Hb_000011_470 Hb_000011_470 Hb_012717_030--Hb_000011_470 Hb_006111_040 Hb_006111_040 Hb_012717_030--Hb_006111_040 Hb_000060_070 Hb_000060_070 Hb_012717_030--Hb_000060_070 Hb_012707_020 Hb_012707_020 Hb_012717_030--Hb_012707_020 Hb_002200_100 Hb_002200_100 Hb_012717_030--Hb_002200_100 Hb_000375_180 Hb_000375_180 Hb_005654_010--Hb_000375_180 Hb_012938_010 Hb_012938_010 Hb_005654_010--Hb_012938_010 Hb_001335_050 Hb_001335_050 Hb_005654_010--Hb_001335_050 Hb_071130_040 Hb_071130_040 Hb_005654_010--Hb_071130_040 Hb_107221_010 Hb_107221_010 Hb_005654_010--Hb_107221_010 Hb_000757_090--Hb_156924_020 Hb_000757_090--Hb_094852_010 Hb_178654_020 Hb_178654_020 Hb_000757_090--Hb_178654_020 Hb_000757_090--Hb_012938_010 Hb_025528_010 Hb_025528_010 Hb_005542_170--Hb_025528_010 Hb_002249_200 Hb_002249_200 Hb_005542_170--Hb_002249_200 Hb_005031_010 Hb_005031_010 Hb_005542_170--Hb_005031_010 Hb_101624_010 Hb_101624_010 Hb_005542_170--Hb_101624_010 Hb_033095_050 Hb_033095_050 Hb_005542_170--Hb_033095_050 Hb_001244_030 Hb_001244_030 Hb_005542_170--Hb_001244_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.117586 0.184786 0 0.0762885 0.527091

CAGE analysis