Hb_104735_010

Information

Type -
Description -
Location Contig104735: 5834-6289
Sequence    

Annotation

kegg
ID rcu:RCOM_Mp19
description ccmC; cytochrome c biogenesis C
nr
ID BAO50876.1
description cytochrome c biogenesis C (mitochondrion) [Hevea brasiliensis]
swissprot
ID P92527
description Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMC PE=2 SV=4
trembl
ID W6JNB0
description Cytochrome c biogenesis C OS=Hevea brasiliensis GN=ccmC PE=4 SV=1
Gene Ontology
ID GO:0005739
description cytochrome c biogenesis c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01638: 5606-7954
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_104735_010 0.0 - - cytochrome c biogenesis C (mitochondrion) [Hevea brasiliensis]
2 Hb_041813_030 0.1652229777 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
3 Hb_021374_020 0.1663998354 - - PREDICTED: uncharacterized protein LOC101298847, partial [Fragaria vesca subsp. vesca]
4 Hb_159305_020 0.1778978518 - - 50S ribosomal protein L2-B [Medicago truncatula]
5 Hb_012163_050 0.1788067872 - - ATPase subunit [Medicago truncatula]
6 Hb_097433_030 0.1834788357 - - hypothetical protein CISIN_1g0017192mg, partial [Citrus sinensis]
7 Hb_042463_070 0.1854590139 - - 60S ribosomal protein L16, putative [Ricinus communis]
8 Hb_143004_010 0.1863000247 - - PREDICTED: uncharacterized J domain-containing protein C1071.09c [Eucalyptus grandis]
9 Hb_102602_030 0.1885414475 - - hypothetical protein (mitochondrion) [Vicia faba]
10 Hb_088080_030 0.1894069627 - - ribosomal protein S4 [Hevea brasiliensis]
11 Hb_042463_030 0.1912585123 - - unknown [Lotus japonicus]
12 Hb_000614_270 0.1921048098 - - -
13 Hb_156746_010 0.1945347442 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
14 Hb_189099_020 0.1966088085 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
15 Hb_062192_030 0.1970550641 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]
16 Hb_006040_030 0.1990050277 - - hypothetical protein EUTSA_v10001274mg [Eutrema salsugineum]
17 Hb_013420_020 0.2004824595 - - conserved hypothetical protein [Ricinus communis]
18 Hb_034455_010 0.2007323299 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_001124_170 0.2009376198 - - putative retrotransposon protein [Phyllostachys edulis]
20 Hb_008085_020 0.2013507778 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Populus euphratica]

Gene co-expression network

sample Hb_104735_010 Hb_104735_010 Hb_041813_030 Hb_041813_030 Hb_104735_010--Hb_041813_030 Hb_021374_020 Hb_021374_020 Hb_104735_010--Hb_021374_020 Hb_159305_020 Hb_159305_020 Hb_104735_010--Hb_159305_020 Hb_012163_050 Hb_012163_050 Hb_104735_010--Hb_012163_050 Hb_097433_030 Hb_097433_030 Hb_104735_010--Hb_097433_030 Hb_042463_070 Hb_042463_070 Hb_104735_010--Hb_042463_070 Hb_041813_030--Hb_042463_070 Hb_156746_010 Hb_156746_010 Hb_041813_030--Hb_156746_010 Hb_077242_020 Hb_077242_020 Hb_041813_030--Hb_077242_020 Hb_006040_030 Hb_006040_030 Hb_041813_030--Hb_006040_030 Hb_062192_030 Hb_062192_030 Hb_041813_030--Hb_062192_030 Hb_013420_050 Hb_013420_050 Hb_041813_030--Hb_013420_050 Hb_001124_170 Hb_001124_170 Hb_021374_020--Hb_001124_170 Hb_002495_050 Hb_002495_050 Hb_021374_020--Hb_002495_050 Hb_021374_020--Hb_097433_030 Hb_143004_010 Hb_143004_010 Hb_021374_020--Hb_143004_010 Hb_013420_020 Hb_013420_020 Hb_021374_020--Hb_013420_020 Hb_027745_010 Hb_027745_010 Hb_159305_020--Hb_027745_010 Hb_008085_020 Hb_008085_020 Hb_159305_020--Hb_008085_020 Hb_159305_020--Hb_041813_030 Hb_103255_010 Hb_103255_010 Hb_159305_020--Hb_103255_010 Hb_007645_020 Hb_007645_020 Hb_159305_020--Hb_007645_020 Hb_006040_010 Hb_006040_010 Hb_159305_020--Hb_006040_010 Hb_171685_060 Hb_171685_060 Hb_012163_050--Hb_171685_060 Hb_012163_050--Hb_013420_020 Hb_012163_050--Hb_156746_010 Hb_042463_030 Hb_042463_030 Hb_012163_050--Hb_042463_030 Hb_012163_050--Hb_006040_030 Hb_012163_050--Hb_042463_070 Hb_097433_030--Hb_143004_010 Hb_033623_030 Hb_033623_030 Hb_097433_030--Hb_033623_030 Hb_097433_030--Hb_013420_050 Hb_171685_080 Hb_171685_080 Hb_097433_030--Hb_171685_080 Hb_097433_030--Hb_012163_050 Hb_042463_070--Hb_156746_010 Hb_042463_070--Hb_077242_020 Hb_042463_070--Hb_013420_050 Hb_042463_070--Hb_006040_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.133316 0 0.0516719 0.29439 0.0673137 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.123194 0.81776 0.206891 10.81

CAGE analysis