Hb_104735_020

Information

Type -
Description -
Location Contig104735: 7967-9309
Sequence    

Annotation

kegg
ID rcu:RCOM_Mp18
description atp4; ATPase subunit 4
nr
ID BAO50875.1
description ATPase subunit 4 (mitochondrion) [Hevea brasiliensis]
swissprot
ID P09003
description ATP synthase protein MI25 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID W6JQD1
description ATPase subunit 4 OS=Hevea brasiliensis GN=atp4 PE=4 SV=1
Gene Ontology
ID GO:0005739
description atpase subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_104735_020 0.0 - - ATPase subunit 4 (mitochondrion) [Hevea brasiliensis]
2 Hb_042463_020 0.1363999128 - - conserved hypothetical protein [Ricinus communis]
3 Hb_034168_070 0.1444983352 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
4 Hb_062273_010 0.146712489 - - ATP synthase F0 subunit 9 [Chara vulgaris]
5 Hb_000518_040 0.1521655548 - - -
6 Hb_072212_020 0.1575565806 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
7 Hb_034168_010 0.169983875 - - hypothetical protein [Azospirillum sp. CAG:260]
8 Hb_002553_030 0.1709919783 - - hypothetical protein POPTR_0008s16550g [Populus trichocarpa]
9 Hb_062192_010 0.1738814085 - - -
10 Hb_144027_010 0.1790199755 - - -
11 Hb_002551_030 0.1813562157 - - gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
12 Hb_101733_010 0.1867148159 - - conserved hypothetical protein [Ricinus communis]
13 Hb_027638_010 0.1890230827 - - Protein KES1, putative [Ricinus communis]
14 Hb_007201_010 0.1970161316 - - PREDICTED: uncharacterized protein LOC105631226 isoform X2 [Jatropha curcas]
15 Hb_000879_260 0.1977532153 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
16 Hb_117001_010 0.1981460782 - - -
17 Hb_004052_130 0.1982336148 - - PREDICTED: cytochrome P450 78A5 [Jatropha curcas]
18 Hb_004643_010 0.1986806019 - - cytochrome B, putative [Ricinus communis]
19 Hb_062192_020 0.1987467305 - - cytochrome c biogenesis FN (mitochondrion) [Hevea brasiliensis]
20 Hb_001508_010 0.2002729888 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_104735_020 Hb_104735_020 Hb_042463_020 Hb_042463_020 Hb_104735_020--Hb_042463_020 Hb_034168_070 Hb_034168_070 Hb_104735_020--Hb_034168_070 Hb_062273_010 Hb_062273_010 Hb_104735_020--Hb_062273_010 Hb_000518_040 Hb_000518_040 Hb_104735_020--Hb_000518_040 Hb_072212_020 Hb_072212_020 Hb_104735_020--Hb_072212_020 Hb_034168_010 Hb_034168_010 Hb_104735_020--Hb_034168_010 Hb_042463_020--Hb_034168_070 Hb_156746_010 Hb_156746_010 Hb_042463_020--Hb_156746_010 Hb_012163_050 Hb_012163_050 Hb_042463_020--Hb_012163_050 Hb_042463_020--Hb_062273_010 Hb_042463_070 Hb_042463_070 Hb_042463_020--Hb_042463_070 Hb_034168_070--Hb_156746_010 Hb_004643_010 Hb_004643_010 Hb_034168_070--Hb_004643_010 Hb_041813_030 Hb_041813_030 Hb_034168_070--Hb_041813_030 Hb_034168_070--Hb_042463_070 Hb_034168_070--Hb_012163_050 Hb_062273_010--Hb_072212_020 Hb_062273_010--Hb_034168_070 Hb_062192_030 Hb_062192_030 Hb_062273_010--Hb_062192_030 Hb_189099_020 Hb_189099_020 Hb_062273_010--Hb_189099_020 Hb_117001_010 Hb_117001_010 Hb_000518_040--Hb_117001_010 Hb_144027_010 Hb_144027_010 Hb_000518_040--Hb_144027_010 Hb_006405_040 Hb_006405_040 Hb_000518_040--Hb_006405_040 Hb_000518_040--Hb_062273_010 Hb_000518_040--Hb_072212_020 Hb_072212_020--Hb_062192_030 Hb_072212_020--Hb_042463_020 Hb_088080_030 Hb_088080_030 Hb_072212_020--Hb_088080_030 Hb_072212_020--Hb_189099_020 Hb_072212_020--Hb_034168_070 Hb_000920_020 Hb_000920_020 Hb_034168_010--Hb_000920_020 Hb_034168_010--Hb_189099_020 Hb_004374_090 Hb_004374_090 Hb_034168_010--Hb_004374_090 Hb_062192_020 Hb_062192_020 Hb_034168_010--Hb_062192_020 Hb_002551_030 Hb_002551_030 Hb_034168_010--Hb_002551_030 Hb_034168_010--Hb_062192_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.185436 0.881013 0.314912 0.0306928 0.129002 0.0972297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0581729 0.104531 0.0944221 6.72415

CAGE analysis