Hb_104764_010

Information

Type -
Description -
Location Contig104764: 1-672
Sequence    

Annotation

kegg
ID tcc:TCM_025227
description YELLOW STRIPE like 5
nr
ID KDP41617.1
description hypothetical protein JCGZ_16024 [Jatropha curcas]
swissprot
ID Q6R3K4
description Probable metal-nicotianamine transporter YSL8 OS=Arabidopsis thaliana GN=YSL8 PE=1 SV=2
trembl
ID A0A067KZK7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16024 PE=4 SV=1
Gene Ontology
ID GO:0055085
description metal-nicotianamine transporter ysl7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_104764_010 0.0 - - hypothetical protein JCGZ_16024 [Jatropha curcas]
2 Hb_001771_080 0.1525698401 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Amborella trichopoda]
3 Hb_173030_010 0.2070024713 - - hypothetical protein RCOM_1321060 [Ricinus communis]
4 Hb_002341_020 0.2098407358 - - PREDICTED: pyruvate decarboxylase 2 [Populus euphratica]
5 Hb_007558_020 0.212596902 - - hypothetical protein JCGZ_17631 [Jatropha curcas]
6 Hb_006907_080 0.2147474247 - - PREDICTED: RPM1-interacting protein 4-like [Jatropha curcas]
7 Hb_000886_030 0.2154395822 - - PREDICTED: uncharacterized protein LOC105113410 [Populus euphratica]
8 Hb_003687_030 0.2217172659 - - protein phosphatase 2c, putative [Ricinus communis]
9 Hb_140049_010 0.2283570756 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]
10 Hb_002035_110 0.2307827978 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
11 Hb_005663_070 0.2311371878 - - dehydrin protein [Manihot esculenta]
12 Hb_098533_020 0.2401467992 - - PREDICTED: zinc finger AN1 domain-containing stress-associated protein 12 [Jatropha curcas]
13 Hb_172632_050 0.2414305015 - - PREDICTED: uncharacterized protein LOC105646134 [Jatropha curcas]
14 Hb_185224_010 0.2450178107 - - zinc finger protein, putative [Ricinus communis]
15 Hb_004724_210 0.2451032495 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000045_300 0.2457007185 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier isoform X1 [Jatropha curcas]
17 Hb_171900_020 0.245830599 - - PREDICTED: uncharacterized protein LOC105643207 [Jatropha curcas]
18 Hb_002249_070 0.246344412 - - gcn4-complementing protein, putative [Ricinus communis]
19 Hb_000465_510 0.2470898024 - - PREDICTED: GTP-binding protein YPTM2 [Populus euphratica]
20 Hb_000788_060 0.2479069895 - - PREDICTED: uncharacterized protein LOC105629705 [Jatropha curcas]

Gene co-expression network

sample Hb_104764_010 Hb_104764_010 Hb_001771_080 Hb_001771_080 Hb_104764_010--Hb_001771_080 Hb_173030_010 Hb_173030_010 Hb_104764_010--Hb_173030_010 Hb_002341_020 Hb_002341_020 Hb_104764_010--Hb_002341_020 Hb_007558_020 Hb_007558_020 Hb_104764_010--Hb_007558_020 Hb_006907_080 Hb_006907_080 Hb_104764_010--Hb_006907_080 Hb_000886_030 Hb_000886_030 Hb_104764_010--Hb_000886_030 Hb_001771_080--Hb_007558_020 Hb_098533_020 Hb_098533_020 Hb_001771_080--Hb_098533_020 Hb_006907_100 Hb_006907_100 Hb_001771_080--Hb_006907_100 Hb_062038_010 Hb_062038_010 Hb_001771_080--Hb_062038_010 Hb_000394_110 Hb_000394_110 Hb_001771_080--Hb_000394_110 Hb_000057_080 Hb_000057_080 Hb_173030_010--Hb_000057_080 Hb_005363_010 Hb_005363_010 Hb_173030_010--Hb_005363_010 Hb_030944_010 Hb_030944_010 Hb_173030_010--Hb_030944_010 Hb_003442_100 Hb_003442_100 Hb_173030_010--Hb_003442_100 Hb_173030_010--Hb_006907_080 Hb_002636_080 Hb_002636_080 Hb_002341_020--Hb_002636_080 Hb_001123_210 Hb_001123_210 Hb_002341_020--Hb_001123_210 Hb_021888_050 Hb_021888_050 Hb_002341_020--Hb_021888_050 Hb_000975_360 Hb_000975_360 Hb_002341_020--Hb_000975_360 Hb_116608_010 Hb_116608_010 Hb_002341_020--Hb_116608_010 Hb_002042_130 Hb_002042_130 Hb_002341_020--Hb_002042_130 Hb_007558_020--Hb_000394_110 Hb_000343_180 Hb_000343_180 Hb_007558_020--Hb_000343_180 Hb_002849_140 Hb_002849_140 Hb_007558_020--Hb_002849_140 Hb_007558_020--Hb_006907_080 Hb_140049_010 Hb_140049_010 Hb_007558_020--Hb_140049_010 Hb_006907_080--Hb_140049_010 Hb_000120_150 Hb_000120_150 Hb_006907_080--Hb_000120_150 Hb_000418_080 Hb_000418_080 Hb_006907_080--Hb_000418_080 Hb_002035_110 Hb_002035_110 Hb_006907_080--Hb_002035_110 Hb_003687_030 Hb_003687_030 Hb_000886_030--Hb_003687_030 Hb_001675_030 Hb_001675_030 Hb_000886_030--Hb_001675_030 Hb_000529_280 Hb_000529_280 Hb_000886_030--Hb_000529_280 Hb_172632_050 Hb_172632_050 Hb_000886_030--Hb_172632_050 Hb_004787_040 Hb_004787_040 Hb_000886_030--Hb_004787_040 Hb_000465_510 Hb_000465_510 Hb_000886_030--Hb_000465_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.470629 0.380485 0.468171 0.0695627 0.0499988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.428371 0.538777 0.239189 0.19217 0

CAGE analysis