Hb_104812_020

Information

Type transcription factor
Description TF Family: LOB
Location Contig104812: 3684-4621
Sequence    

Annotation

kegg
ID rcu:RCOM_0311750
description LOB domain-containing protein, putative
nr
ID XP_002527399.1
description LOB domain-containing protein, putative [Ricinus communis]
swissprot
ID Q9LRW1
description LOB domain-containing protein 22 OS=Arabidopsis thaliana GN=LBD22 PE=2 SV=1
trembl
ID B9SN30
description LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_0311750 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01650: 167-2805
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_104812_020 0.0 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
2 Hb_071379_010 0.3227574412 - - PREDICTED: mitogen-activated protein kinase kinase kinase 3-like [Nelumbo nucifera]
3 Hb_000842_060 0.3275336142 - - PREDICTED: uncharacterized protein LOC105636760 [Jatropha curcas]
4 Hb_059301_010 0.3303730544 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
5 Hb_004342_020 0.3336264597 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]
6 Hb_003494_010 0.3413431718 - - hypothetical protein JCGZ_19838 [Jatropha curcas]
7 Hb_002259_200 0.341549807 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000088_220 0.3438168464 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
9 Hb_006831_100 0.3445404429 - - snRNA-activating protein complex subunit, putative [Ricinus communis]
10 Hb_000513_080 0.3486343061 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 43 [Jatropha curcas]
11 Hb_000189_060 0.3489152836 - - PREDICTED: uncharacterized protein LOC105637477 [Jatropha curcas]
12 Hb_079751_010 0.3517463901 - - r2r3-myb transcription factor, putative [Ricinus communis]
13 Hb_000107_470 0.3526588143 - - cellulose synthase, putative [Ricinus communis]
14 Hb_045481_010 0.3622153571 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
15 Hb_001507_080 0.3637229085 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
16 Hb_002518_060 0.3684352289 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
17 Hb_005725_200 0.3698766979 transcription factor TF Family: GRF hypothetical protein JCGZ_15989 [Jatropha curcas]
18 Hb_000922_420 0.3701800694 - - glutaredoxin-1, grx1, putative [Ricinus communis]
19 Hb_007594_100 0.3705189536 transcription factor TF Family: MIKC mads box protein, putative [Ricinus communis]
20 Hb_011671_170 0.3737261016 - - PREDICTED: protein DYAD [Jatropha curcas]

Gene co-expression network

sample Hb_104812_020 Hb_104812_020 Hb_071379_010 Hb_071379_010 Hb_104812_020--Hb_071379_010 Hb_000842_060 Hb_000842_060 Hb_104812_020--Hb_000842_060 Hb_059301_010 Hb_059301_010 Hb_104812_020--Hb_059301_010 Hb_004342_020 Hb_004342_020 Hb_104812_020--Hb_004342_020 Hb_003494_010 Hb_003494_010 Hb_104812_020--Hb_003494_010 Hb_002259_200 Hb_002259_200 Hb_104812_020--Hb_002259_200 Hb_006973_060 Hb_006973_060 Hb_071379_010--Hb_006973_060 Hb_000189_060 Hb_000189_060 Hb_071379_010--Hb_000189_060 Hb_000513_080 Hb_000513_080 Hb_071379_010--Hb_000513_080 Hb_071379_010--Hb_059301_010 Hb_000723_070 Hb_000723_070 Hb_071379_010--Hb_000723_070 Hb_045481_010 Hb_045481_010 Hb_071379_010--Hb_045481_010 Hb_002986_080 Hb_002986_080 Hb_000842_060--Hb_002986_080 Hb_000138_050 Hb_000138_050 Hb_000842_060--Hb_000138_050 Hb_002475_120 Hb_002475_120 Hb_000842_060--Hb_002475_120 Hb_028207_020 Hb_028207_020 Hb_000842_060--Hb_028207_020 Hb_001195_120 Hb_001195_120 Hb_000842_060--Hb_001195_120 Hb_002596_030 Hb_002596_030 Hb_000842_060--Hb_002596_030 Hb_059301_010--Hb_045481_010 Hb_014919_020 Hb_014919_020 Hb_059301_010--Hb_014919_020 Hb_003740_010 Hb_003740_010 Hb_059301_010--Hb_003740_010 Hb_000816_010 Hb_000816_010 Hb_059301_010--Hb_000816_010 Hb_000123_100 Hb_000123_100 Hb_059301_010--Hb_000123_100 Hb_160233_020 Hb_160233_020 Hb_059301_010--Hb_160233_020 Hb_019715_010 Hb_019715_010 Hb_004342_020--Hb_019715_010 Hb_001277_280 Hb_001277_280 Hb_004342_020--Hb_001277_280 Hb_001377_030 Hb_001377_030 Hb_004342_020--Hb_001377_030 Hb_002450_040 Hb_002450_040 Hb_004342_020--Hb_002450_040 Hb_011249_030 Hb_011249_030 Hb_004342_020--Hb_011249_030 Hb_026549_020 Hb_026549_020 Hb_004342_020--Hb_026549_020 Hb_003494_010--Hb_004342_020 Hb_012586_050 Hb_012586_050 Hb_003494_010--Hb_012586_050 Hb_002960_110 Hb_002960_110 Hb_003494_010--Hb_002960_110 Hb_003494_010--Hb_019715_010 Hb_002447_020 Hb_002447_020 Hb_003494_010--Hb_002447_020 Hb_027472_130 Hb_027472_130 Hb_003494_010--Hb_027472_130 Hb_004545_020 Hb_004545_020 Hb_002259_200--Hb_004545_020 Hb_021495_010 Hb_021495_010 Hb_002259_200--Hb_021495_010 Hb_025214_120 Hb_025214_120 Hb_002259_200--Hb_025214_120 Hb_010998_050 Hb_010998_050 Hb_002259_200--Hb_010998_050 Hb_010812_070 Hb_010812_070 Hb_002259_200--Hb_010812_070 Hb_001252_240 Hb_001252_240 Hb_002259_200--Hb_001252_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.246008 0 0.354372 0.0442877 0.197526 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0594068 0 0.0852125 0.0377007 0

CAGE analysis