Hb_104855_010

Information

Type -
Description -
Location Contig104855: 1215-2557
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01659: 1881-2132
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_104855_010 0.0 - - -
2 Hb_011671_360 0.0419738052 - - Hyoscyamine 6-dioxygenase, putative [Ricinus communis]
3 Hb_000072_010 0.0494842557 - - hypothetical protein B456_006G246700 [Gossypium raimondii]
4 Hb_005773_010 0.0568812226 - - -
5 Hb_000061_060 0.0614275529 transcription factor TF Family: MYB-related transcription factor MYB28 [Arabidopsis thaliana]
6 Hb_182625_010 0.0644014427 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
7 Hb_014361_140 0.0663806776 - - PREDICTED: peroxidase 51 [Jatropha curcas]
8 Hb_128460_020 0.0861876925 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
9 Hb_000628_050 0.0952407195 - - nucleic acid binding protein, putative [Ricinus communis]
10 Hb_004241_190 0.0953910254 - - -
11 Hb_053935_010 0.1014431347 - - hypothetical protein EUGRSUZ_G02294 [Eucalyptus grandis]
12 Hb_158110_010 0.101499394 - - hypothetical protein CICLE_v10012017mg [Citrus clementina]
13 Hb_003073_060 0.1024648717 - - -
14 Hb_005428_010 0.1088476727 - - cytochrome P450, putative [Ricinus communis]
15 Hb_039440_010 0.1189547953 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000925_020 0.1238508041 - - PREDICTED: protein YLS9 [Jatropha curcas]
17 Hb_000203_090 0.1254779327 - - hypothetical protein POPTR_0013s04080g [Populus trichocarpa]
18 Hb_000373_220 0.1282583242 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
19 Hb_160950_010 0.132326767 - - PREDICTED: uncharacterized protein LOC105761043 [Gossypium raimondii]
20 Hb_108670_010 0.133289546 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]

Gene co-expression network

sample Hb_104855_010 Hb_104855_010 Hb_011671_360 Hb_011671_360 Hb_104855_010--Hb_011671_360 Hb_000072_010 Hb_000072_010 Hb_104855_010--Hb_000072_010 Hb_005773_010 Hb_005773_010 Hb_104855_010--Hb_005773_010 Hb_000061_060 Hb_000061_060 Hb_104855_010--Hb_000061_060 Hb_182625_010 Hb_182625_010 Hb_104855_010--Hb_182625_010 Hb_014361_140 Hb_014361_140 Hb_104855_010--Hb_014361_140 Hb_011671_360--Hb_182625_010 Hb_011671_360--Hb_000072_010 Hb_003073_060 Hb_003073_060 Hb_011671_360--Hb_003073_060 Hb_005428_010 Hb_005428_010 Hb_011671_360--Hb_005428_010 Hb_011671_360--Hb_005773_010 Hb_000072_010--Hb_005773_010 Hb_039440_010 Hb_039440_010 Hb_000072_010--Hb_039440_010 Hb_000072_010--Hb_005428_010 Hb_160950_010 Hb_160950_010 Hb_000072_010--Hb_160950_010 Hb_000628_050 Hb_000628_050 Hb_005773_010--Hb_000628_050 Hb_005773_010--Hb_160950_010 Hb_005773_010--Hb_039440_010 Hb_005773_010--Hb_000061_060 Hb_000061_060--Hb_014361_140 Hb_128460_020 Hb_128460_020 Hb_000061_060--Hb_128460_020 Hb_053935_010 Hb_053935_010 Hb_000061_060--Hb_053935_010 Hb_004241_190 Hb_004241_190 Hb_000061_060--Hb_004241_190 Hb_158110_010 Hb_158110_010 Hb_000061_060--Hb_158110_010 Hb_000203_090 Hb_000203_090 Hb_182625_010--Hb_000203_090 Hb_182625_010--Hb_014361_140 Hb_182625_010--Hb_003073_060 Hb_000152_090 Hb_000152_090 Hb_182625_010--Hb_000152_090 Hb_014361_140--Hb_128460_020 Hb_014361_140--Hb_053935_010 Hb_014361_140--Hb_158110_010 Hb_014361_140--Hb_004241_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.07399 0.721889 1.69402 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis