Hb_104855_020

Information

Type -
Description -
Location Contig104855: 2565-4515
Sequence    

Annotation

kegg
ID rcu:RCOM_0909020
description ankyrin repeat-containing protein, putative
nr
ID XP_002517018.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q6AWW5
description Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1
trembl
ID B9RTE9
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0909020 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01659: 1881-2132
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_104855_020 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_009683_060 0.042611794 - - -
3 Hb_008579_010 0.0448555611 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
4 Hb_002486_030 0.0461010925 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
5 Hb_143232_020 0.0497423836 - - hypothetical protein JCGZ_20467 [Jatropha curcas]
6 Hb_142691_010 0.0527792824 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
7 Hb_001623_020 0.0531968455 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
8 Hb_073423_010 0.0538960824 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_147137_020 0.067722271 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
10 Hb_000904_090 0.0721849646 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
11 Hb_012691_040 0.073022718 - - PREDICTED: cytochrome P450 81E8-like [Fragaria vesca subsp. vesca]
12 Hb_167802_010 0.0783310124 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
13 Hb_114932_010 0.0832526994 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_013726_100 0.0882509698 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
15 Hb_011111_010 0.0898087824 - - PREDICTED: putative RING-H2 finger protein ATL21A [Jatropha curcas]
16 Hb_004117_360 0.0917202449 - - hypothetical protein JCGZ_00367 [Jatropha curcas]
17 Hb_000227_410 0.0933278271 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]
18 Hb_001514_110 0.0934035244 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002475_110 0.0939781088 - - E3 ubiquitin ligase PUB14, putative [Ricinus communis]
20 Hb_000338_020 0.0959422149 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]

Gene co-expression network

sample Hb_104855_020 Hb_104855_020 Hb_009683_060 Hb_009683_060 Hb_104855_020--Hb_009683_060 Hb_008579_010 Hb_008579_010 Hb_104855_020--Hb_008579_010 Hb_002486_030 Hb_002486_030 Hb_104855_020--Hb_002486_030 Hb_143232_020 Hb_143232_020 Hb_104855_020--Hb_143232_020 Hb_142691_010 Hb_142691_010 Hb_104855_020--Hb_142691_010 Hb_001623_020 Hb_001623_020 Hb_104855_020--Hb_001623_020 Hb_167802_010 Hb_167802_010 Hb_009683_060--Hb_167802_010 Hb_009683_060--Hb_001623_020 Hb_000904_090 Hb_000904_090 Hb_009683_060--Hb_000904_090 Hb_114932_010 Hb_114932_010 Hb_009683_060--Hb_114932_010 Hb_000338_020 Hb_000338_020 Hb_009683_060--Hb_000338_020 Hb_008579_010--Hb_002486_030 Hb_008579_010--Hb_142691_010 Hb_073423_010 Hb_073423_010 Hb_008579_010--Hb_073423_010 Hb_012691_040 Hb_012691_040 Hb_008579_010--Hb_012691_040 Hb_008579_010--Hb_143232_020 Hb_002486_030--Hb_073423_010 Hb_002486_030--Hb_142691_010 Hb_002486_030--Hb_012691_040 Hb_002486_030--Hb_143232_020 Hb_143232_020--Hb_073423_010 Hb_011111_010 Hb_011111_010 Hb_143232_020--Hb_011111_010 Hb_143232_020--Hb_001623_020 Hb_142691_010--Hb_012691_040 Hb_142691_010--Hb_073423_010 Hb_001514_110 Hb_001514_110 Hb_142691_010--Hb_001514_110 Hb_000256_050 Hb_000256_050 Hb_001623_020--Hb_000256_050 Hb_013726_100 Hb_013726_100 Hb_001623_020--Hb_013726_100 Hb_002475_110 Hb_002475_110 Hb_001623_020--Hb_002475_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.433079 0.0449631 0.05363 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis