Hb_105028_010

Information

Type -
Description -
Location Contig105028: 34-696
Sequence    

Annotation

kegg
ID tcc:TCM_017511
description Retrotransposon protein, putative
nr
ID XP_007032152.1
description Retrotransposon protein, putative [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061EEM4
description Retrotransposon protein, putative OS=Theobroma cacao GN=TCM_017511 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_105028_010 0.0 - - Retrotransposon protein, putative [Theobroma cacao]
2 Hb_094900_010 0.3124539002 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_159036_010 0.3307684871 - - -
4 Hb_169780_010 0.3449902703 - - PREDICTED: uncharacterized protein LOC104240691 [Nicotiana sylvestris]
5 Hb_000752_070 0.3474866275 - - PREDICTED: mavicyanin-like [Jatropha curcas]
6 Hb_001952_040 0.3682837411 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_122556_010 0.3723596399 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
8 Hb_002888_010 0.3763017754 - - -
9 Hb_119504_010 0.382371769 - - hypothetical protein JCGZ_15304 [Jatropha curcas]
10 Hb_003523_040 0.3836609731 - - F15O4.13 [Arabidopsis thaliana]
11 Hb_000679_220 0.389818911 - - PREDICTED: uncharacterized protein LOC105637638 [Jatropha curcas]
12 Hb_001623_210 0.3948058025 - - PREDICTED: receptor-like protein kinase 2 [Jatropha curcas]
13 Hb_162633_010 0.3956419181 - - hypothetical protein POPTR_0011s02600g [Populus trichocarpa]
14 Hb_000856_370 0.396802656 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
15 Hb_006909_040 0.3986052509 - - -
16 Hb_000504_130 0.4012785335 - - GPI transamidase component family protein [Populus trichocarpa]
17 Hb_079067_010 0.4013042905 - - PREDICTED: protein SPT2 homolog [Malus domestica]
18 Hb_026239_010 0.401850916 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
19 Hb_067769_010 0.4054911715 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
20 Hb_159679_010 0.4097494501 - - PREDICTED: uncharacterized protein LOC105786838 [Gossypium raimondii]

Gene co-expression network

sample Hb_105028_010 Hb_105028_010 Hb_094900_010 Hb_094900_010 Hb_105028_010--Hb_094900_010 Hb_159036_010 Hb_159036_010 Hb_105028_010--Hb_159036_010 Hb_169780_010 Hb_169780_010 Hb_105028_010--Hb_169780_010 Hb_000752_070 Hb_000752_070 Hb_105028_010--Hb_000752_070 Hb_001952_040 Hb_001952_040 Hb_105028_010--Hb_001952_040 Hb_122556_010 Hb_122556_010 Hb_105028_010--Hb_122556_010 Hb_000679_220 Hb_000679_220 Hb_094900_010--Hb_000679_220 Hb_119504_010 Hb_119504_010 Hb_094900_010--Hb_119504_010 Hb_094900_010--Hb_159036_010 Hb_003523_040 Hb_003523_040 Hb_094900_010--Hb_003523_040 Hb_094900_010--Hb_122556_010 Hb_005344_030 Hb_005344_030 Hb_094900_010--Hb_005344_030 Hb_159036_010--Hb_122556_010 Hb_016482_010 Hb_016482_010 Hb_159036_010--Hb_016482_010 Hb_133820_010 Hb_133820_010 Hb_159036_010--Hb_133820_010 Hb_159036_010--Hb_003523_040 Hb_012572_020 Hb_012572_020 Hb_159036_010--Hb_012572_020 Hb_034658_010 Hb_034658_010 Hb_169780_010--Hb_034658_010 Hb_162633_010 Hb_162633_010 Hb_169780_010--Hb_162633_010 Hb_005337_110 Hb_005337_110 Hb_169780_010--Hb_005337_110 Hb_141425_010 Hb_141425_010 Hb_169780_010--Hb_141425_010 Hb_000987_110 Hb_000987_110 Hb_169780_010--Hb_000987_110 Hb_123396_010 Hb_123396_010 Hb_169780_010--Hb_123396_010 Hb_004162_260 Hb_004162_260 Hb_000752_070--Hb_004162_260 Hb_024154_020 Hb_024154_020 Hb_000752_070--Hb_024154_020 Hb_014834_010 Hb_014834_010 Hb_000752_070--Hb_014834_010 Hb_002843_080 Hb_002843_080 Hb_000752_070--Hb_002843_080 Hb_001059_170 Hb_001059_170 Hb_000752_070--Hb_001059_170 Hb_002843_070 Hb_002843_070 Hb_000752_070--Hb_002843_070 Hb_079067_010 Hb_079067_010 Hb_001952_040--Hb_079067_010 Hb_086077_020 Hb_086077_020 Hb_001952_040--Hb_086077_020 Hb_089419_010 Hb_089419_010 Hb_001952_040--Hb_089419_010 Hb_004440_080 Hb_004440_080 Hb_001952_040--Hb_004440_080 Hb_000012_460 Hb_000012_460 Hb_001952_040--Hb_000012_460 Hb_000948_090 Hb_000948_090 Hb_001952_040--Hb_000948_090 Hb_122556_010--Hb_133820_010 Hb_122556_010--Hb_003523_040 Hb_011484_010 Hb_011484_010 Hb_122556_010--Hb_011484_010 Hb_006132_030 Hb_006132_030 Hb_122556_010--Hb_006132_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.047707 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.174658 0 0.243398 0 0.134816

CAGE analysis