Hb_105105_020

Information

Type -
Description -
Location Contig105105: 29374-45421
Sequence    

Annotation

kegg
ID rcu:RCOM_0476150
description vacuolar protein sorting vps41, putative
nr
ID XP_002523748.1
description vacuolar protein sorting vps41, putative [Ricinus communis]
swissprot
ID P93231
description Vacuolar protein sorting-associated protein 41 homolog OS=Solanum lycopersicum GN=VPS41 PE=2 SV=1
trembl
ID B9SCM9
description Vacuolar protein sorting vps41, putative OS=Ricinus communis GN=RCOM_0476150 PE=4 SV=1
Gene Ontology
ID GO:0005622
description vacuolar protein sorting-associated protein 41 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01748: 29955-45344
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_105105_020 0.0 - - vacuolar protein sorting vps41, putative [Ricinus communis]
2 Hb_013399_100 0.0567401217 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000060_090 0.0603610501 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a [Jatropha curcas]
4 Hb_009548_020 0.0719369843 - - structural constituent of cell wall, putative [Ricinus communis]
5 Hb_015934_040 0.0726775704 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
6 Hb_016172_020 0.0729272131 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
7 Hb_010618_010 0.074049769 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
8 Hb_006455_120 0.0741781097 - - n6-DNA-methyltransferase, putative [Ricinus communis]
9 Hb_003504_030 0.0759674173 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
10 Hb_011995_010 0.0761377406 - - dc50, putative [Ricinus communis]
11 Hb_000009_560 0.0763704066 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
12 Hb_001409_020 0.0768371534 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
13 Hb_000003_250 0.0795338914 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
14 Hb_001248_060 0.0804624616 - - conserved hypothetical protein [Ricinus communis]
15 Hb_143629_210 0.0806043199 - - PREDICTED: transcription factor PIF3 isoform X1 [Jatropha curcas]
16 Hb_000029_300 0.0808398411 - - hypothetical protein JCGZ_10048 [Jatropha curcas]
17 Hb_001377_490 0.0815677869 - - PREDICTED: uncharacterized protein LOC105642821 [Jatropha curcas]
18 Hb_011037_030 0.082023931 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
19 Hb_006017_010 0.0821924168 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
20 Hb_001198_100 0.0852926996 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]

Gene co-expression network

sample Hb_105105_020 Hb_105105_020 Hb_013399_100 Hb_013399_100 Hb_105105_020--Hb_013399_100 Hb_000060_090 Hb_000060_090 Hb_105105_020--Hb_000060_090 Hb_009548_020 Hb_009548_020 Hb_105105_020--Hb_009548_020 Hb_015934_040 Hb_015934_040 Hb_105105_020--Hb_015934_040 Hb_016172_020 Hb_016172_020 Hb_105105_020--Hb_016172_020 Hb_010618_010 Hb_010618_010 Hb_105105_020--Hb_010618_010 Hb_001409_020 Hb_001409_020 Hb_013399_100--Hb_001409_020 Hb_013399_100--Hb_000060_090 Hb_003504_030 Hb_003504_030 Hb_013399_100--Hb_003504_030 Hb_000780_230 Hb_000780_230 Hb_013399_100--Hb_000780_230 Hb_013399_100--Hb_010618_010 Hb_000060_090--Hb_001409_020 Hb_000029_300 Hb_000029_300 Hb_000060_090--Hb_000029_300 Hb_008643_210 Hb_008643_210 Hb_000060_090--Hb_008643_210 Hb_010222_050 Hb_010222_050 Hb_000060_090--Hb_010222_050 Hb_188063_020 Hb_188063_020 Hb_009548_020--Hb_188063_020 Hb_002835_370 Hb_002835_370 Hb_009548_020--Hb_002835_370 Hb_000072_220 Hb_000072_220 Hb_009548_020--Hb_000072_220 Hb_006634_070 Hb_006634_070 Hb_009548_020--Hb_006634_070 Hb_009548_020--Hb_016172_020 Hb_012022_090 Hb_012022_090 Hb_009548_020--Hb_012022_090 Hb_015934_040--Hb_010618_010 Hb_000297_010 Hb_000297_010 Hb_015934_040--Hb_000297_010 Hb_000331_670 Hb_000331_670 Hb_015934_040--Hb_000331_670 Hb_010128_080 Hb_010128_080 Hb_015934_040--Hb_010128_080 Hb_000032_520 Hb_000032_520 Hb_015934_040--Hb_000032_520 Hb_001248_060 Hb_001248_060 Hb_015934_040--Hb_001248_060 Hb_008406_200 Hb_008406_200 Hb_016172_020--Hb_008406_200 Hb_016172_020--Hb_008643_210 Hb_004143_060 Hb_004143_060 Hb_016172_020--Hb_004143_060 Hb_016172_020--Hb_010618_010 Hb_016172_020--Hb_001409_020 Hb_016172_020--Hb_001248_060 Hb_010618_010--Hb_001248_060 Hb_010618_010--Hb_001409_020 Hb_000225_040 Hb_000225_040 Hb_010618_010--Hb_000225_040 Hb_002518_280 Hb_002518_280 Hb_010618_010--Hb_002518_280 Hb_011995_010 Hb_011995_010 Hb_010618_010--Hb_011995_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.8751 37.0132 31.2085 37.225 37.4104 53.5858
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.3024 33.9244 56.4447 23.7197 31.0621

CAGE analysis