Hb_105123_010

Information

Type -
Description -
Location Contig105123: 15579-29991
Sequence    

Annotation

kegg
ID vvi:100257757
description probable protein phosphatase 2C 8
nr
ID XP_012080526.1
description PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
swissprot
ID Q9LMT1
description Probable protein phosphatase 2C 8 OS=Arabidopsis thaliana GN=At1g18030 PE=2 SV=2
trembl
ID D7SJ47
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g03100 PE=4 SV=1
Gene Ontology
ID GO:0005737
description probable protein phosphatase 2c 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01749: 22700-22914
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_105123_010 0.0 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
2 Hb_155159_030 0.0507209698 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
3 Hb_127552_030 0.0716699002 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
4 Hb_012098_080 0.0755943066 - - KOM, putative [Ricinus communis]
5 Hb_032258_030 0.0803979537 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
6 Hb_000861_020 0.0809833362 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
7 Hb_022693_060 0.0834815007 - - -
8 Hb_025240_040 0.0899734297 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
9 Hb_003333_060 0.0909461483 - - PREDICTED: uncharacterized protein LOC105628461 [Jatropha curcas]
10 Hb_015934_070 0.094219109 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
11 Hb_000111_420 0.0966565062 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Populus euphratica]
12 Hb_000373_280 0.1002113384 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
13 Hb_001959_210 0.1012647584 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
14 Hb_001009_170 0.1030104459 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
15 Hb_103118_010 0.1030614008 - - PREDICTED: uncharacterized protein LOC105643231 [Jatropha curcas]
16 Hb_000486_010 0.1041958227 - - PREDICTED: uncharacterized protein LOC105646661 isoform X1 [Jatropha curcas]
17 Hb_002685_210 0.1046655953 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
18 Hb_020000_010 0.1046734526 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
19 Hb_002496_010 0.1056853626 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
20 Hb_001789_070 0.1057123254 - - PREDICTED: probable prolyl 4-hydroxylase 12 [Jatropha curcas]

Gene co-expression network

sample Hb_105123_010 Hb_105123_010 Hb_155159_030 Hb_155159_030 Hb_105123_010--Hb_155159_030 Hb_127552_030 Hb_127552_030 Hb_105123_010--Hb_127552_030 Hb_012098_080 Hb_012098_080 Hb_105123_010--Hb_012098_080 Hb_032258_030 Hb_032258_030 Hb_105123_010--Hb_032258_030 Hb_000861_020 Hb_000861_020 Hb_105123_010--Hb_000861_020 Hb_022693_060 Hb_022693_060 Hb_105123_010--Hb_022693_060 Hb_155159_030--Hb_127552_030 Hb_015934_070 Hb_015934_070 Hb_155159_030--Hb_015934_070 Hb_155159_030--Hb_032258_030 Hb_025240_040 Hb_025240_040 Hb_155159_030--Hb_025240_040 Hb_001579_220 Hb_001579_220 Hb_155159_030--Hb_001579_220 Hb_127552_030--Hb_015934_070 Hb_127552_030--Hb_025240_040 Hb_000976_170 Hb_000976_170 Hb_127552_030--Hb_000976_170 Hb_108350_010 Hb_108350_010 Hb_127552_030--Hb_108350_010 Hb_012098_080--Hb_155159_030 Hb_166222_010 Hb_166222_010 Hb_012098_080--Hb_166222_010 Hb_002496_010 Hb_002496_010 Hb_012098_080--Hb_002496_010 Hb_001301_100 Hb_001301_100 Hb_012098_080--Hb_001301_100 Hb_000922_410 Hb_000922_410 Hb_012098_080--Hb_000922_410 Hb_008648_010 Hb_008648_010 Hb_032258_030--Hb_008648_010 Hb_004097_050 Hb_004097_050 Hb_032258_030--Hb_004097_050 Hb_009658_020 Hb_009658_020 Hb_032258_030--Hb_009658_020 Hb_005306_170 Hb_005306_170 Hb_032258_030--Hb_005306_170 Hb_103118_010 Hb_103118_010 Hb_000861_020--Hb_103118_010 Hb_000631_080 Hb_000631_080 Hb_000861_020--Hb_000631_080 Hb_086639_040 Hb_086639_040 Hb_000861_020--Hb_086639_040 Hb_000061_210 Hb_000061_210 Hb_000861_020--Hb_000061_210 Hb_002154_100 Hb_002154_100 Hb_000861_020--Hb_002154_100 Hb_001258_040 Hb_001258_040 Hb_022693_060--Hb_001258_040 Hb_002205_070 Hb_002205_070 Hb_022693_060--Hb_002205_070 Hb_000959_260 Hb_000959_260 Hb_022693_060--Hb_000959_260 Hb_000635_250 Hb_000635_250 Hb_022693_060--Hb_000635_250 Hb_000373_280 Hb_000373_280 Hb_022693_060--Hb_000373_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.58694 3.02738 4.15981 4.64008 7.94932 13.5376
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1499 11.6242 9.72792 9.45425 11.7081

CAGE analysis