Hb_105148_020

Information

Type -
Description -
Location Contig105148: 12005-15880
Sequence    

Annotation

kegg
ID pop:POPTR_0018s11930g
description POPTRDRAFT_262770; serine carboxypeptidase S28 family protein
nr
ID XP_012071462.1
description PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
swissprot
ID Q2TA14
description Lysosomal Pro-X carboxypeptidase OS=Bos taurus GN=PRCP PE=2 SV=1
trembl
ID A0A067L2D4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03998 PE=4 SV=1
Gene Ontology
ID GO:0004180
description lysosomal pro-x carboxypeptidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01752: 11991-13103 , PASA_asmbl_01753: 13190-15736
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_105148_020 0.0 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
2 Hb_019053_040 0.0605432719 - - cytochrome P450, putative [Ricinus communis]
3 Hb_006620_030 0.0626749189 - - nitrate reductase, putative [Ricinus communis]
4 Hb_001166_010 0.0646989896 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
5 Hb_023582_010 0.0736607168 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001258_130 0.0745912147 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
7 Hb_023827_030 0.0753184966 - - PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic-like [Populus euphratica]
8 Hb_016297_010 0.0754609888 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
9 Hb_129956_010 0.0762595428 - - PREDICTED: serine/threonine-protein kinase SAPK2 [Eucalyptus grandis]
10 Hb_000282_020 0.0826526715 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
11 Hb_000510_250 0.0834615324 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
12 Hb_002044_100 0.0834780457 - - PREDICTED: uncharacterized protein LOC105643555 [Jatropha curcas]
13 Hb_001369_590 0.0856566052 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
14 Hb_000144_130 0.0884583621 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002066_100 0.0904673627 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
16 Hb_001671_070 0.0948800844 - - kinase, putative [Ricinus communis]
17 Hb_002499_050 0.0949194575 - - receptor protein kinase, putative [Ricinus communis]
18 Hb_000139_040 0.0973976636 - - spermine synthase, putative [Ricinus communis]
19 Hb_007853_030 0.0980520506 - - structural molecule, putative [Ricinus communis]
20 Hb_000069_440 0.1012729468 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]

Gene co-expression network

sample Hb_105148_020 Hb_105148_020 Hb_019053_040 Hb_019053_040 Hb_105148_020--Hb_019053_040 Hb_006620_030 Hb_006620_030 Hb_105148_020--Hb_006620_030 Hb_001166_010 Hb_001166_010 Hb_105148_020--Hb_001166_010 Hb_023582_010 Hb_023582_010 Hb_105148_020--Hb_023582_010 Hb_001258_130 Hb_001258_130 Hb_105148_020--Hb_001258_130 Hb_023827_030 Hb_023827_030 Hb_105148_020--Hb_023827_030 Hb_019053_040--Hb_023582_010 Hb_000282_020 Hb_000282_020 Hb_019053_040--Hb_000282_020 Hb_019053_040--Hb_001166_010 Hb_019053_040--Hb_023827_030 Hb_002066_100 Hb_002066_100 Hb_019053_040--Hb_002066_100 Hb_006501_080 Hb_006501_080 Hb_006620_030--Hb_006501_080 Hb_001369_590 Hb_001369_590 Hb_006620_030--Hb_001369_590 Hb_004308_030 Hb_004308_030 Hb_006620_030--Hb_004308_030 Hb_002499_050 Hb_002499_050 Hb_006620_030--Hb_002499_050 Hb_129956_010 Hb_129956_010 Hb_006620_030--Hb_129956_010 Hb_007853_030 Hb_007853_030 Hb_001166_010--Hb_007853_030 Hb_000144_130 Hb_000144_130 Hb_001166_010--Hb_000144_130 Hb_002044_100 Hb_002044_100 Hb_001166_010--Hb_002044_100 Hb_031377_010 Hb_031377_010 Hb_001166_010--Hb_031377_010 Hb_000510_250 Hb_000510_250 Hb_001166_010--Hb_000510_250 Hb_000722_030 Hb_000722_030 Hb_023582_010--Hb_000722_030 Hb_023582_010--Hb_000282_020 Hb_016297_010 Hb_016297_010 Hb_023582_010--Hb_016297_010 Hb_000005_060 Hb_000005_060 Hb_023582_010--Hb_000005_060 Hb_001511_210 Hb_001511_210 Hb_001258_130--Hb_001511_210 Hb_001258_130--Hb_016297_010 Hb_000139_040 Hb_000139_040 Hb_001258_130--Hb_000139_040 Hb_001258_130--Hb_002066_100 Hb_001258_130--Hb_000722_030 Hb_000069_440 Hb_000069_440 Hb_023827_030--Hb_000069_440 Hb_023827_030--Hb_016297_010 Hb_023827_030--Hb_000282_020 Hb_023827_030--Hb_023582_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0126673 0.301977 7.20363 2.51508 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0542894 2.90353

CAGE analysis