Hb_105251_010

Information

Type -
Description -
Location Contig105251: 2821-3976
Sequence    

Annotation

kegg
ID rcu:RCOM_1110630
description ankyrin repeat-containing protein, putative
nr
ID XP_002521638.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q6AWW5
description Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1
trembl
ID B9S6L9
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1110630 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_105251_010 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_003793_040 0.0014551065 - - hypothetical protein CARUB_v10021783mg [Capsella rubella]
3 Hb_001102_280 0.0027743184 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
4 Hb_031318_010 0.0045982004 - - -
5 Hb_152910_030 0.004600725 - - PREDICTED: UDP-glycosyltransferase 89B1-like [Jatropha curcas]
6 Hb_000127_150 0.0048513999 - - PREDICTED: cytochrome P450 85A1-like [Jatropha curcas]
7 Hb_015866_010 0.0049595606 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
8 Hb_001833_030 0.005108221 - - polyprotein [Oryza australiensis]
9 Hb_005465_050 0.0054566158 - - PREDICTED: uncharacterized protein LOC105635964 [Jatropha curcas]
10 Hb_001216_020 0.0055276498 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
11 Hb_001980_040 0.0073605528 - - -
12 Hb_186064_010 0.0104518451 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_033165_010 0.0110885187 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_056506_090 0.0171459941 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
15 Hb_153924_010 0.0178974894 - - hypothetical protein JCGZ_22941 [Jatropha curcas]
16 Hb_000312_030 0.0248412626 - - PREDICTED: uncharacterized protein LOC104888072 [Beta vulgaris subsp. vulgaris]
17 Hb_067634_010 0.02511628 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
18 Hb_093161_010 0.0261058507 - - -
19 Hb_174258_010 0.0325082458 - - PREDICTED: uncharacterized protein LOC105631548 [Jatropha curcas]
20 Hb_115868_030 0.0343591935 - - Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_105251_010 Hb_105251_010 Hb_003793_040 Hb_003793_040 Hb_105251_010--Hb_003793_040 Hb_001102_280 Hb_001102_280 Hb_105251_010--Hb_001102_280 Hb_031318_010 Hb_031318_010 Hb_105251_010--Hb_031318_010 Hb_152910_030 Hb_152910_030 Hb_105251_010--Hb_152910_030 Hb_000127_150 Hb_000127_150 Hb_105251_010--Hb_000127_150 Hb_015866_010 Hb_015866_010 Hb_105251_010--Hb_015866_010 Hb_003793_040--Hb_001102_280 Hb_003793_040--Hb_031318_010 Hb_003793_040--Hb_152910_030 Hb_003793_040--Hb_000127_150 Hb_003793_040--Hb_015866_010 Hb_001102_280--Hb_031318_010 Hb_001102_280--Hb_152910_030 Hb_001102_280--Hb_000127_150 Hb_001102_280--Hb_015866_010 Hb_001833_030 Hb_001833_030 Hb_001102_280--Hb_001833_030 Hb_031318_010--Hb_152910_030 Hb_031318_010--Hb_000127_150 Hb_031318_010--Hb_015866_010 Hb_031318_010--Hb_001833_030 Hb_001216_020 Hb_001216_020 Hb_031318_010--Hb_001216_020 Hb_152910_030--Hb_000127_150 Hb_152910_030--Hb_015866_010 Hb_152910_030--Hb_001833_030 Hb_152910_030--Hb_001216_020 Hb_000127_150--Hb_015866_010 Hb_000127_150--Hb_001833_030 Hb_000127_150--Hb_001216_020 Hb_015866_010--Hb_001833_030 Hb_015866_010--Hb_001216_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0306933 0.0783222

CAGE analysis