Hb_105328_010

Information

Type -
Description -
Location Contig105328: 40468-43441
Sequence    

Annotation

kegg
ID rcu:RCOM_0812150
description cysteine protease, putative (EC:1.3.1.74)
nr
ID XP_012065182.1
description PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
swissprot
ID P43297
description Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1
trembl
ID B9RYC1
description Cysteine protease, putative OS=Ricinus communis GN=RCOM_0812150 PE=3 SV=1
Gene Ontology
ID GO:0008234
description cysteine proteinase rd21a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01813: 40486-43407 , PASA_asmbl_01814: 41268-41717
cDNA
(Sanger)
(ID:Location)		 047_I14.ab1: 40491-41864

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_105328_010 0.0 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
2 Hb_000032_450 0.1352009351 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
3 Hb_001085_150 0.1759504267 - - Purple acid phosphatase 15 [Theobroma cacao]
4 Hb_083940_010 0.1890743412 - - Zeamatin precursor, putative [Ricinus communis]
5 Hb_000820_050 0.1984911439 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
6 Hb_000703_280 0.1990825741 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
7 Hb_006472_080 0.2021911331 - - -
8 Hb_000215_280 0.2040875822 - - Protein-tyrosine phosphatase mitochondrial 1, mitochondrial precursor, putative [Ricinus communis]
9 Hb_071130_050 0.2060552612 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
10 Hb_000189_170 0.2081110772 - - calcium ion binding protein, putative [Ricinus communis]
11 Hb_002687_160 0.212324261 - - PREDICTED: uncharacterized protein LOC105643395 [Jatropha curcas]
12 Hb_005470_030 0.2135485364 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X2 [Jatropha curcas]
13 Hb_000820_060 0.2156465891 - - -
14 Hb_003044_080 0.2156653748 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
15 Hb_021943_090 0.2169195424 - - PREDICTED: probable methylenetetrahydrofolate reductase [Jatropha curcas]
16 Hb_000189_410 0.2186859039 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002284_220 0.2189283124 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
18 Hb_003878_050 0.2197076655 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
19 Hb_000320_260 0.2199315081 - - unnamed protein product [Vitis vinifera]
20 Hb_022250_020 0.2214024285 - - PREDICTED: uncharacterized protein LOC105648703 [Jatropha curcas]

Gene co-expression network

sample Hb_105328_010 Hb_105328_010 Hb_000032_450 Hb_000032_450 Hb_105328_010--Hb_000032_450 Hb_001085_150 Hb_001085_150 Hb_105328_010--Hb_001085_150 Hb_083940_010 Hb_083940_010 Hb_105328_010--Hb_083940_010 Hb_000820_050 Hb_000820_050 Hb_105328_010--Hb_000820_050 Hb_000703_280 Hb_000703_280 Hb_105328_010--Hb_000703_280 Hb_006472_080 Hb_006472_080 Hb_105328_010--Hb_006472_080 Hb_000115_010 Hb_000115_010 Hb_000032_450--Hb_000115_010 Hb_003878_050 Hb_003878_050 Hb_000032_450--Hb_003878_050 Hb_000032_450--Hb_000703_280 Hb_007534_060 Hb_007534_060 Hb_000032_450--Hb_007534_060 Hb_026889_040 Hb_026889_040 Hb_000032_450--Hb_026889_040 Hb_000804_020 Hb_000804_020 Hb_001085_150--Hb_000804_020 Hb_001085_150--Hb_083940_010 Hb_003025_030 Hb_003025_030 Hb_001085_150--Hb_003025_030 Hb_003659_010 Hb_003659_010 Hb_001085_150--Hb_003659_010 Hb_005545_020 Hb_005545_020 Hb_001085_150--Hb_005545_020 Hb_001147_050 Hb_001147_050 Hb_083940_010--Hb_001147_050 Hb_000193_260 Hb_000193_260 Hb_083940_010--Hb_000193_260 Hb_000189_170 Hb_000189_170 Hb_083940_010--Hb_000189_170 Hb_002534_130 Hb_002534_130 Hb_083940_010--Hb_002534_130 Hb_005214_170 Hb_005214_170 Hb_083940_010--Hb_005214_170 Hb_001221_330 Hb_001221_330 Hb_083940_010--Hb_001221_330 Hb_000820_060 Hb_000820_060 Hb_000820_050--Hb_000820_060 Hb_000820_050--Hb_000115_010 Hb_006268_020 Hb_006268_020 Hb_000820_050--Hb_006268_020 Hb_000820_050--Hb_000032_450 Hb_000820_050--Hb_006472_080 Hb_000103_250 Hb_000103_250 Hb_000703_280--Hb_000103_250 Hb_000012_080 Hb_000012_080 Hb_000703_280--Hb_000012_080 Hb_021943_090 Hb_021943_090 Hb_000703_280--Hb_021943_090 Hb_001904_050 Hb_001904_050 Hb_000703_280--Hb_001904_050 Hb_000703_280--Hb_026889_040 Hb_000244_170 Hb_000244_170 Hb_000703_280--Hb_000244_170 Hb_006472_080--Hb_001085_150 Hb_006472_080--Hb_000820_060 Hb_006472_070 Hb_006472_070 Hb_006472_080--Hb_006472_070 Hb_000320_260 Hb_000320_260 Hb_006472_080--Hb_000320_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.87037 3.36123 19.2255 17.5095 1.53025 1.56806
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.29069 3.08229 21.4524 14.4463 10.4667

CAGE analysis