Hb_105386_010

Information

Type -
Description -
Location Contig105386: 95-808
Sequence    

Annotation

kegg
ID vvi:100242794
description 60S ribosomal protein L7-2
nr
ID XP_012074809.1
description PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
swissprot
ID P60040
description 60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=2 SV=1
trembl
ID A0A067KHB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08960 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l7-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_105386_010 0.0 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
2 Hb_001047_100 0.0453515219 - - 40S ribosomal protein S18, putative [Ricinus communis]
3 Hb_001358_030 0.060569962 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
4 Hb_000189_340 0.0666982353 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
5 Hb_000349_060 0.06706687 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
6 Hb_023001_050 0.0730038374 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
7 Hb_003746_040 0.0797188571 - - PREDICTED: protein N-terminal glutamine amidohydrolase [Jatropha curcas]
8 Hb_000640_240 0.0799107707 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
9 Hb_001766_150 0.0825188345 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
10 Hb_003050_200 0.0839357097 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
11 Hb_009222_010 0.084670605 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_011848_010 0.0847794251 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
13 Hb_012092_010 0.0851092498 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
14 Hb_000290_020 0.0861485434 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
15 Hb_011970_030 0.086861934 - - PREDICTED: uncharacterized protein LOC105641805 [Jatropha curcas]
16 Hb_000457_110 0.0877459229 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
17 Hb_000780_060 0.0878152499 - - hypothetical protein CICLE_v10017178mg [Citrus clementina]
18 Hb_000008_330 0.0885621293 - - 60S ribosomal protein L12A [Hevea brasiliensis]
19 Hb_011224_060 0.088765932 - - hypothetical protein POPTR_0011s16880g [Populus trichocarpa]
20 Hb_012193_010 0.0894466354 - - nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_105386_010 Hb_105386_010 Hb_001047_100 Hb_001047_100 Hb_105386_010--Hb_001047_100 Hb_001358_030 Hb_001358_030 Hb_105386_010--Hb_001358_030 Hb_000189_340 Hb_000189_340 Hb_105386_010--Hb_000189_340 Hb_000349_060 Hb_000349_060 Hb_105386_010--Hb_000349_060 Hb_023001_050 Hb_023001_050 Hb_105386_010--Hb_023001_050 Hb_003746_040 Hb_003746_040 Hb_105386_010--Hb_003746_040 Hb_001047_100--Hb_003746_040 Hb_001047_100--Hb_000189_340 Hb_000290_020 Hb_000290_020 Hb_001047_100--Hb_000290_020 Hb_001047_100--Hb_001358_030 Hb_001766_150 Hb_001766_150 Hb_001047_100--Hb_001766_150 Hb_000640_240 Hb_000640_240 Hb_001358_030--Hb_000640_240 Hb_012008_020 Hb_012008_020 Hb_001358_030--Hb_012008_020 Hb_096563_010 Hb_096563_010 Hb_001358_030--Hb_096563_010 Hb_002660_080 Hb_002660_080 Hb_001358_030--Hb_002660_080 Hb_001358_030--Hb_000189_340 Hb_000189_340--Hb_001766_150 Hb_009222_010 Hb_009222_010 Hb_000189_340--Hb_009222_010 Hb_142439_010 Hb_142439_010 Hb_000189_340--Hb_142439_010 Hb_004944_010 Hb_004944_010 Hb_000349_060--Hb_004944_010 Hb_000780_060 Hb_000780_060 Hb_000349_060--Hb_000780_060 Hb_000349_060--Hb_023001_050 Hb_000349_060--Hb_001358_030 Hb_000465_430 Hb_000465_430 Hb_000349_060--Hb_000465_430 Hb_003502_080 Hb_003502_080 Hb_023001_050--Hb_003502_080 Hb_023001_050--Hb_000465_430 Hb_005016_170 Hb_005016_170 Hb_023001_050--Hb_005016_170 Hb_012092_010 Hb_012092_010 Hb_023001_050--Hb_012092_010 Hb_011828_050 Hb_011828_050 Hb_003746_040--Hb_011828_050 Hb_043302_010 Hb_043302_010 Hb_003746_040--Hb_043302_010 Hb_010128_130 Hb_010128_130 Hb_003746_040--Hb_010128_130 Hb_003746_040--Hb_000290_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
200.732 101.589 122.261 122.31 235.718 293.03
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
142.197 238.378 97.4961 90.9822 37.9382

CAGE analysis