Hb_105427_010

Information

Type -
Description -
Location Contig105427: 137-680
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_105427_010 0.0 - - -
2 Hb_007547_040 0.1856649517 - - Auxin response factor 9 [Aegilops tauschii]
3 Hb_050686_010 0.1952727053 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001097_060 0.1953717593 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 8 [Jatropha curcas]
5 Hb_002267_090 0.2010709532 - - Cytochrome c oxidase assembly protein COX19, putative [Ricinus communis]
6 Hb_005928_080 0.2029764133 - - PREDICTED: probable galacturonosyltransferase 6 isoform X1 [Jatropha curcas]
7 Hb_001916_130 0.2038863913 - - Uncharacterized protein TCM_002409 [Theobroma cacao]
8 Hb_000832_200 0.204311795 - - 2-oxoglutarate dehydrogenase, putative [Ricinus communis]
9 Hb_007547_050 0.2044828703 - - Auxin response factor 9 [Aegilops tauschii]
10 Hb_000544_040 0.2047472039 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
11 Hb_099698_010 0.2059208933 - - -
12 Hb_000173_210 0.2071184944 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
13 Hb_003177_010 0.2108047338 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
14 Hb_162378_010 0.2168670249 - - hypothetical protein JCGZ_20480 [Jatropha curcas]
15 Hb_000040_050 0.2172197119 - - PREDICTED: uncharacterized protein LOC102617857 isoform X1 [Citrus sinensis]
16 Hb_000735_010 0.2178888912 - - -
17 Hb_001279_330 0.2183855678 - - Protein bem46, putative [Ricinus communis]
18 Hb_000497_230 0.2210196416 - - PREDICTED: probable protein S-acyltransferase 6 [Jatropha curcas]
19 Hb_000329_390 0.2237364221 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
20 Hb_002903_120 0.2244488417 - - -

Gene co-expression network

sample Hb_105427_010 Hb_105427_010 Hb_007547_040 Hb_007547_040 Hb_105427_010--Hb_007547_040 Hb_050686_010 Hb_050686_010 Hb_105427_010--Hb_050686_010 Hb_001097_060 Hb_001097_060 Hb_105427_010--Hb_001097_060 Hb_002267_090 Hb_002267_090 Hb_105427_010--Hb_002267_090 Hb_005928_080 Hb_005928_080 Hb_105427_010--Hb_005928_080 Hb_001916_130 Hb_001916_130 Hb_105427_010--Hb_001916_130 Hb_104812_030 Hb_104812_030 Hb_007547_040--Hb_104812_030 Hb_002450_110 Hb_002450_110 Hb_007547_040--Hb_002450_110 Hb_000099_220 Hb_000099_220 Hb_007547_040--Hb_000099_220 Hb_007765_060 Hb_007765_060 Hb_007547_040--Hb_007765_060 Hb_000544_040 Hb_000544_040 Hb_007547_040--Hb_000544_040 Hb_114984_010 Hb_114984_010 Hb_050686_010--Hb_114984_010 Hb_006483_010 Hb_006483_010 Hb_050686_010--Hb_006483_010 Hb_000366_190 Hb_000366_190 Hb_050686_010--Hb_000366_190 Hb_000040_050 Hb_000040_050 Hb_050686_010--Hb_000040_050 Hb_120662_010 Hb_120662_010 Hb_050686_010--Hb_120662_010 Hb_000329_420 Hb_000329_420 Hb_050686_010--Hb_000329_420 Hb_162378_010 Hb_162378_010 Hb_001097_060--Hb_162378_010 Hb_000556_150 Hb_000556_150 Hb_001097_060--Hb_000556_150 Hb_114638_010 Hb_114638_010 Hb_001097_060--Hb_114638_010 Hb_007919_080 Hb_007919_080 Hb_001097_060--Hb_007919_080 Hb_003371_060 Hb_003371_060 Hb_001097_060--Hb_003371_060 Hb_000920_280 Hb_000920_280 Hb_002267_090--Hb_000920_280 Hb_001279_330 Hb_001279_330 Hb_002267_090--Hb_001279_330 Hb_000617_220 Hb_000617_220 Hb_002267_090--Hb_000617_220 Hb_000640_220 Hb_000640_220 Hb_002267_090--Hb_000640_220 Hb_006623_020 Hb_006623_020 Hb_002267_090--Hb_006623_020 Hb_001754_240 Hb_001754_240 Hb_002267_090--Hb_001754_240 Hb_005271_080 Hb_005271_080 Hb_005928_080--Hb_005271_080 Hb_051017_010 Hb_051017_010 Hb_005928_080--Hb_051017_010 Hb_001247_170 Hb_001247_170 Hb_005928_080--Hb_001247_170 Hb_005928_080--Hb_001279_330 Hb_000261_520 Hb_000261_520 Hb_005928_080--Hb_000261_520 Hb_000175_490 Hb_000175_490 Hb_005928_080--Hb_000175_490 Hb_000376_110 Hb_000376_110 Hb_001916_130--Hb_000376_110 Hb_000641_030 Hb_000641_030 Hb_001916_130--Hb_000641_030 Hb_002078_040 Hb_002078_040 Hb_001916_130--Hb_002078_040 Hb_000056_120 Hb_000056_120 Hb_001916_130--Hb_000056_120 Hb_003304_080 Hb_003304_080 Hb_001916_130--Hb_003304_080 Hb_007810_040 Hb_007810_040 Hb_001916_130--Hb_007810_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.8845 0.914873 6.9667 8.62391 31.5272 8.86307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.00324 2.24812 5.7364 0.910486 0.368399

CAGE analysis