Hb_105446_010

Information

Type -
Description -
Location Contig105446: 1-579
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0004672
description s-locus-specific glycoprotein s6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_105446_010 0.0 - - -
2 Hb_000751_210 0.039774779 - - PREDICTED: petal death protein isoform X2 [Jatropha curcas]
3 Hb_112011_010 0.0466274076 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
4 Hb_000658_020 0.0538714275 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Musa acuminata subsp. malaccensis]
5 Hb_017866_010 0.0541584585 - - kinase family protein [Populus trichocarpa]
6 Hb_132438_010 0.0563118583 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
7 Hb_004724_010 0.063514995 - - -
8 Hb_005888_040 0.0754867136 - - PREDICTED: gibberellin 20 oxidase 2 [Jatropha curcas]
9 Hb_062226_080 0.0768192455 - - -
10 Hb_009543_040 0.0791951382 - - -
11 Hb_009252_110 0.0896109299 - - hypothetical protein JCGZ_11492 [Jatropha curcas]
12 Hb_012879_010 0.0918727719 - - conserved hypothetical protein [Ricinus communis]
13 Hb_015026_010 0.0970850215 - - -
14 Hb_002267_040 0.1002181881 - - -
15 Hb_001157_130 0.1044908302 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]
16 Hb_000504_050 0.1053981315 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
17 Hb_000575_010 0.1221231424 - - PREDICTED: uncharacterized protein LOC103454030 [Malus domestica]
18 Hb_000616_060 0.1254821127 - - -
19 Hb_060272_010 0.1282136547 - - PREDICTED: gibberellin 20 oxidase 2 [Populus euphratica]
20 Hb_000891_060 0.1300437317 - - hypothetical protein JCGZ_11234 [Jatropha curcas]

Gene co-expression network

sample Hb_105446_010 Hb_105446_010 Hb_000751_210 Hb_000751_210 Hb_105446_010--Hb_000751_210 Hb_112011_010 Hb_112011_010 Hb_105446_010--Hb_112011_010 Hb_000658_020 Hb_000658_020 Hb_105446_010--Hb_000658_020 Hb_017866_010 Hb_017866_010 Hb_105446_010--Hb_017866_010 Hb_132438_010 Hb_132438_010 Hb_105446_010--Hb_132438_010 Hb_004724_010 Hb_004724_010 Hb_105446_010--Hb_004724_010 Hb_000751_210--Hb_132438_010 Hb_009543_040 Hb_009543_040 Hb_000751_210--Hb_009543_040 Hb_000751_210--Hb_017866_010 Hb_000751_210--Hb_112011_010 Hb_001157_130 Hb_001157_130 Hb_000751_210--Hb_001157_130 Hb_112011_010--Hb_000658_020 Hb_112011_010--Hb_004724_010 Hb_112011_010--Hb_017866_010 Hb_112011_010--Hb_132438_010 Hb_000658_020--Hb_004724_010 Hb_000658_020--Hb_017866_010 Hb_000658_020--Hb_000751_210 Hb_012879_010 Hb_012879_010 Hb_000658_020--Hb_012879_010 Hb_017866_010--Hb_132438_010 Hb_017866_010--Hb_004724_010 Hb_132438_010--Hb_009543_040 Hb_132438_010--Hb_001157_130 Hb_000575_010 Hb_000575_010 Hb_132438_010--Hb_000575_010 Hb_004724_010--Hb_000751_210 Hb_004724_010--Hb_012879_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.56349 0 2.47038 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.06392 0

CAGE analysis