Hb_105480_010

Information

Type -
Description -
Location Contig105480: 5804-6542
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_105480_010 0.0 - - -
2 Hb_111332_010 0.0137808753 - - Dihydroneopterin aldolase [Morus notabilis]
3 Hb_005542_020 0.0237543057 - - lupus la ribonucleoprotein, putative [Ricinus communis]
4 Hb_128173_010 0.0401228738 - - PREDICTED: uncharacterized protein LOC104219073 [Nicotiana sylvestris]
5 Hb_007761_010 0.0428422297 - - -
6 Hb_013727_010 0.0692012218 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
7 Hb_009268_110 0.1175941183 - - PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]
8 Hb_089491_010 0.1194877095 - - -
9 Hb_006692_050 0.1247798894 - - Chloroplastic lipocalin [Theobroma cacao]
10 Hb_000795_010 0.1580948229 - - -
11 Hb_136856_010 0.1585783543 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
12 Hb_076583_010 0.1730454846 - - hypothetical protein JCGZ_17827 [Jatropha curcas]
13 Hb_021068_020 0.1762953436 - - -
14 Hb_003636_050 0.1795739342 - - PREDICTED: bark storage protein A-like [Populus euphratica]
15 Hb_042026_010 0.1840821747 - - RNA binding protein, putative [Ricinus communis]
16 Hb_000004_140 0.1954417399 - - -
17 Hb_009066_010 0.1967851604 - - -
18 Hb_068347_020 0.201782571 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
19 Hb_027394_010 0.2018034465 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
20 Hb_012340_040 0.2081247453 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase-like [Populus euphratica]

Gene co-expression network

sample Hb_105480_010 Hb_105480_010 Hb_111332_010 Hb_111332_010 Hb_105480_010--Hb_111332_010 Hb_005542_020 Hb_005542_020 Hb_105480_010--Hb_005542_020 Hb_128173_010 Hb_128173_010 Hb_105480_010--Hb_128173_010 Hb_007761_010 Hb_007761_010 Hb_105480_010--Hb_007761_010 Hb_013727_010 Hb_013727_010 Hb_105480_010--Hb_013727_010 Hb_009268_110 Hb_009268_110 Hb_105480_010--Hb_009268_110 Hb_111332_010--Hb_128173_010 Hb_111332_010--Hb_007761_010 Hb_111332_010--Hb_005542_020 Hb_111332_010--Hb_013727_010 Hb_006692_050 Hb_006692_050 Hb_111332_010--Hb_006692_050 Hb_005542_020--Hb_013727_010 Hb_005542_020--Hb_128173_010 Hb_005542_020--Hb_007761_010 Hb_005542_020--Hb_009268_110 Hb_128173_010--Hb_007761_010 Hb_128173_010--Hb_006692_050 Hb_128173_010--Hb_013727_010 Hb_007761_010--Hb_006692_050 Hb_007761_010--Hb_013727_010 Hb_013727_010--Hb_009268_110 Hb_089491_010 Hb_089491_010 Hb_013727_010--Hb_089491_010 Hb_136856_010 Hb_136856_010 Hb_013727_010--Hb_136856_010 Hb_009268_110--Hb_089491_010 Hb_009268_110--Hb_136856_010 Hb_021068_020 Hb_021068_020 Hb_009268_110--Hb_021068_020 Hb_009066_010 Hb_009066_010 Hb_009268_110--Hb_009066_010 Hb_068347_020 Hb_068347_020 Hb_009268_110--Hb_068347_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0721662 0.387663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis