Hb_105660_010

Information

Type -
Description -
Location Contig105660: 401-1837
Sequence    

Annotation

kegg
ID rcu:RCOM_1053900
description Potassium channel AKT6, putative
nr
ID XP_012077507.1
description PREDICTED: potassium channel AKT6-like [Jatropha curcas]
swissprot
ID Q8GXE6
description Potassium channel AKT6 OS=Arabidopsis thaliana GN=AKT6 PE=1 SV=2
trembl
ID A0A067KBU0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07188 PE=4 SV=1
Gene Ontology
ID GO:0005249
description potassium channel akt1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01879: 1506-1660
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_105660_010 0.0 - - PREDICTED: potassium channel AKT6-like [Jatropha curcas]
2 Hb_020967_010 0.1602333215 - - -
3 Hb_004453_180 0.1639224384 - - hypothetical protein JCGZ_07188 [Jatropha curcas]
4 Hb_001357_030 0.172001865 - - hypothetical protein F383_04880 [Gossypium arboreum]
5 Hb_186647_010 0.1767370483 - - -
6 Hb_000172_050 0.1854120214 - - PREDICTED: uncharacterized protein LOC105650611 [Jatropha curcas]
7 Hb_006550_010 0.1883437863 - - PREDICTED: vacuolar amino acid transporter 1 [Eucalyptus grandis]
8 Hb_000056_080 0.1926406071 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
9 Hb_001277_420 0.1926565155 - - PREDICTED: protein lin-12-like isoform X2 [Populus euphratica]
10 Hb_028001_020 0.1960933464 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
11 Hb_120117_010 0.1980631838 - - Disease resistance protein RFL1, putative [Ricinus communis]
12 Hb_000856_050 0.1990544019 - - PREDICTED: HIPL1 protein-like [Jatropha curcas]
13 Hb_053519_010 0.1996101849 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
14 Hb_176894_010 0.1996951119 - - -
15 Hb_000002_360 0.2003896813 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
16 Hb_001491_040 0.2042327074 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
17 Hb_030944_010 0.2047537484 - - PREDICTED: uncharacterized protein LOC105633455 [Jatropha curcas]
18 Hb_000465_260 0.2122949353 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
19 Hb_002235_410 0.2126981967 - - PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Jatropha curcas]
20 Hb_005695_020 0.2129281175 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]

Gene co-expression network

sample Hb_105660_010 Hb_105660_010 Hb_020967_010 Hb_020967_010 Hb_105660_010--Hb_020967_010 Hb_004453_180 Hb_004453_180 Hb_105660_010--Hb_004453_180 Hb_001357_030 Hb_001357_030 Hb_105660_010--Hb_001357_030 Hb_186647_010 Hb_186647_010 Hb_105660_010--Hb_186647_010 Hb_000172_050 Hb_000172_050 Hb_105660_010--Hb_000172_050 Hb_006550_010 Hb_006550_010 Hb_105660_010--Hb_006550_010 Hb_053519_010 Hb_053519_010 Hb_020967_010--Hb_053519_010 Hb_000336_190 Hb_000336_190 Hb_020967_010--Hb_000336_190 Hb_001472_140 Hb_001472_140 Hb_020967_010--Hb_001472_140 Hb_000003_760 Hb_000003_760 Hb_020967_010--Hb_000003_760 Hb_003531_040 Hb_003531_040 Hb_020967_010--Hb_003531_040 Hb_004453_180--Hb_020967_010 Hb_103788_010 Hb_103788_010 Hb_004453_180--Hb_103788_010 Hb_012760_060 Hb_012760_060 Hb_004453_180--Hb_012760_060 Hb_003637_020 Hb_003637_020 Hb_004453_180--Hb_003637_020 Hb_000270_770 Hb_000270_770 Hb_004453_180--Hb_000270_770 Hb_160405_010 Hb_160405_010 Hb_001357_030--Hb_160405_010 Hb_000302_100 Hb_000302_100 Hb_001357_030--Hb_000302_100 Hb_000733_090 Hb_000733_090 Hb_001357_030--Hb_000733_090 Hb_001016_040 Hb_001016_040 Hb_001357_030--Hb_001016_040 Hb_049915_010 Hb_049915_010 Hb_001357_030--Hb_049915_010 Hb_155541_020 Hb_155541_020 Hb_186647_010--Hb_155541_020 Hb_186647_010--Hb_001357_030 Hb_186647_010--Hb_049915_010 Hb_186647_010--Hb_000302_100 Hb_011918_010 Hb_011918_010 Hb_186647_010--Hb_011918_010 Hb_000853_100 Hb_000853_100 Hb_000172_050--Hb_000853_100 Hb_006615_160 Hb_006615_160 Hb_000172_050--Hb_006615_160 Hb_001355_070 Hb_001355_070 Hb_000172_050--Hb_001355_070 Hb_017857_010 Hb_017857_010 Hb_000172_050--Hb_017857_010 Hb_014720_050 Hb_014720_050 Hb_000172_050--Hb_014720_050 Hb_000094_120 Hb_000094_120 Hb_000172_050--Hb_000094_120 Hb_001277_420 Hb_001277_420 Hb_006550_010--Hb_001277_420 Hb_007313_050 Hb_007313_050 Hb_006550_010--Hb_007313_050 Hb_035006_010 Hb_035006_010 Hb_006550_010--Hb_035006_010 Hb_024357_010 Hb_024357_010 Hb_006550_010--Hb_024357_010 Hb_055531_010 Hb_055531_010 Hb_006550_010--Hb_055531_010 Hb_021443_020 Hb_021443_020 Hb_006550_010--Hb_021443_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.464654 6.96726 2.14797 10.6434 0.503093 0.407761
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.391277 1.73107 0.638433 3.29284 0.315421

CAGE analysis