Hb_105785_010

Information

Type -
Description -
Location Contig105785: 6168-6656
Sequence    

Annotation

kegg
ID rcu:RCOM_0087290
description Serine/threonine-protein kinase PBS1, putative (EC:2.7.11.13)
nr
ID XP_002534329.1
description Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
swissprot
ID Q9SCZ4
description Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana GN=FER PE=1 SV=1
trembl
ID B9T7W0
description Serine/threonine-protein kinase PBS1, putative OS=Ricinus communis GN=RCOM_0087290 PE=3 SV=1
Gene Ontology
ID GO:0004674
description receptor-like protein kinase feronia

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_105785_010 0.0 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
2 Hb_052469_020 0.0456199876 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Vitis vinifera]
3 Hb_007595_040 0.048264825 - - ribosomal protein L2 (chloroplast) [Berberis bealei]
4 Hb_007456_030 0.0563717459 - - -
5 Hb_000367_150 0.0875103473 - - -
6 Hb_005337_010 0.099334625 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
7 Hb_000134_240 0.1070357064 - - cytochrome P450, putative [Ricinus communis]
8 Hb_000326_110 0.1110781279 - - PREDICTED: uncharacterized protein LOC105632350 [Jatropha curcas]
9 Hb_002630_030 0.1210236596 - - OSIGBa0132I10.1 [Oryza sativa Indica Group]
10 Hb_183420_010 0.1310336813 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
11 Hb_000138_030 0.1311611681 - - -
12 Hb_000417_010 0.1311828876 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
13 Hb_058844_010 0.1312002458 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
14 Hb_162002_010 0.1312580749 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
15 Hb_001691_130 0.1313302634 - - PREDICTED: uncharacterized protein LOC104587431 [Nelumbo nucifera]
16 Hb_081874_010 0.1318066635 - - PREDICTED: uncharacterized protein LOC102581051 [Solanum tuberosum]
17 Hb_001357_320 0.1329411978 - - GRP3S, putative [Ricinus communis]
18 Hb_124016_010 0.133064189 - - hypothetical protein POPTR_0008s21806g [Populus trichocarpa]
19 Hb_008013_030 0.1332074388 - - -
20 Hb_002041_020 0.1333057487 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]

Gene co-expression network

sample Hb_105785_010 Hb_105785_010 Hb_052469_020 Hb_052469_020 Hb_105785_010--Hb_052469_020 Hb_007595_040 Hb_007595_040 Hb_105785_010--Hb_007595_040 Hb_007456_030 Hb_007456_030 Hb_105785_010--Hb_007456_030 Hb_000367_150 Hb_000367_150 Hb_105785_010--Hb_000367_150 Hb_005337_010 Hb_005337_010 Hb_105785_010--Hb_005337_010 Hb_000134_240 Hb_000134_240 Hb_105785_010--Hb_000134_240 Hb_052469_020--Hb_007595_040 Hb_052469_020--Hb_007456_030 Hb_052469_020--Hb_005337_010 Hb_052469_020--Hb_000367_150 Hb_002762_010 Hb_002762_010 Hb_052469_020--Hb_002762_010 Hb_007595_040--Hb_005337_010 Hb_007595_040--Hb_007456_030 Hb_007595_040--Hb_000367_150 Hb_007595_040--Hb_002762_010 Hb_007456_030--Hb_000367_150 Hb_007456_030--Hb_005337_010 Hb_001691_130 Hb_001691_130 Hb_007456_030--Hb_001691_130 Hb_000367_150--Hb_001691_130 Hb_001231_020 Hb_001231_020 Hb_000367_150--Hb_001231_020 Hb_106274_010 Hb_106274_010 Hb_000367_150--Hb_106274_010 Hb_002630_030 Hb_002630_030 Hb_000367_150--Hb_002630_030 Hb_005551_030 Hb_005551_030 Hb_000367_150--Hb_005551_030 Hb_005337_010--Hb_002762_010 Hb_043960_010 Hb_043960_010 Hb_005337_010--Hb_043960_010 Hb_018746_010 Hb_018746_010 Hb_005337_010--Hb_018746_010 Hb_000326_110 Hb_000326_110 Hb_000134_240--Hb_000326_110 Hb_011628_050 Hb_011628_050 Hb_000134_240--Hb_011628_050 Hb_004557_020 Hb_004557_020 Hb_000134_240--Hb_004557_020 Hb_012398_020 Hb_012398_020 Hb_000134_240--Hb_012398_020 Hb_003007_020 Hb_003007_020 Hb_000134_240--Hb_003007_020 Hb_013093_010 Hb_013093_010 Hb_000134_240--Hb_013093_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.281023 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0455709 1.0173

CAGE analysis