Hb_105814_020

Information

Type -
Description -
Location Contig105814: 18906-20480
Sequence    

Annotation

kegg
ID pop:POPTR_0001s46690g
description POPTRDRAFT_642620; hypothetical protein
nr
ID AEK87147.1
description berberine bridge enzyme [Hevea brasiliensis]
swissprot
ID Q9SVG4
description Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2
trembl
ID I6MGW2
description Berberine bridge enzyme OS=Hevea brasiliensis GN=BBE1 PE=2 SV=1
Gene Ontology
ID GO:0008762
description reticuline oxidase-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_105814_020 0.0 - - berberine bridge enzyme [Hevea brasiliensis]
2 Hb_123078_010 0.0733754771 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
3 Hb_000041_160 0.0862496014 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
4 Hb_004730_010 0.1021522492 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
5 Hb_027474_010 0.1047398448 - - PREDICTED: uncharacterized protein LOC105629982 [Jatropha curcas]
6 Hb_002267_030 0.1060747791 - - hypothetical protein JCGZ_24883 [Jatropha curcas]
7 Hb_009403_010 0.1385786732 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
8 Hb_000813_090 0.1399834243 - - hypothetical protein CARUB_v10019318mg [Capsella rubella]
9 Hb_026415_010 0.142900353 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
10 Hb_004218_290 0.1452518587 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 6 isoform X2 [Jatropha curcas]
11 Hb_002097_210 0.1459616412 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001989_080 0.1493535139 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_003145_030 0.1507014441 - - conserved hypothetical protein [Ricinus communis]
14 Hb_008550_030 0.1542266279 - - PREDICTED: tonoplast dicarboxylate transporter [Jatropha curcas]
15 Hb_001907_050 0.1578364196 - - Receptor like protein 6, putative [Theobroma cacao]
16 Hb_011101_010 0.1581777354 - - hypothetical protein JCGZ_25132 [Jatropha curcas]
17 Hb_000974_030 0.1609219093 - - PREDICTED: uncharacterized protein LOC105128463 isoform X1 [Populus euphratica]
18 Hb_001046_040 0.1611796445 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_002335_010 0.1622896047 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
20 Hb_000325_070 0.1626636748 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_105814_020 Hb_105814_020 Hb_123078_010 Hb_123078_010 Hb_105814_020--Hb_123078_010 Hb_000041_160 Hb_000041_160 Hb_105814_020--Hb_000041_160 Hb_004730_010 Hb_004730_010 Hb_105814_020--Hb_004730_010 Hb_027474_010 Hb_027474_010 Hb_105814_020--Hb_027474_010 Hb_002267_030 Hb_002267_030 Hb_105814_020--Hb_002267_030 Hb_009403_010 Hb_009403_010 Hb_105814_020--Hb_009403_010 Hb_123078_010--Hb_000041_160 Hb_123078_010--Hb_027474_010 Hb_123078_010--Hb_002267_030 Hb_011101_010 Hb_011101_010 Hb_123078_010--Hb_011101_010 Hb_004218_290 Hb_004218_290 Hb_123078_010--Hb_004218_290 Hb_002335_010 Hb_002335_010 Hb_000041_160--Hb_002335_010 Hb_000041_160--Hb_027474_010 Hb_000041_160--Hb_004730_010 Hb_000956_100 Hb_000956_100 Hb_000041_160--Hb_000956_100 Hb_000813_090 Hb_000813_090 Hb_004730_010--Hb_000813_090 Hb_000015_230 Hb_000015_230 Hb_004730_010--Hb_000015_230 Hb_004730_010--Hb_123078_010 Hb_004730_010--Hb_027474_010 Hb_002097_210 Hb_002097_210 Hb_027474_010--Hb_002097_210 Hb_001989_080 Hb_001989_080 Hb_027474_010--Hb_001989_080 Hb_001046_040 Hb_001046_040 Hb_027474_010--Hb_001046_040 Hb_005714_140 Hb_005714_140 Hb_002267_030--Hb_005714_140 Hb_000260_130 Hb_000260_130 Hb_002267_030--Hb_000260_130 Hb_008550_030 Hb_008550_030 Hb_002267_030--Hb_008550_030 Hb_002820_090 Hb_002820_090 Hb_002267_030--Hb_002820_090 Hb_026415_010 Hb_026415_010 Hb_009403_010--Hb_026415_010 Hb_004879_030 Hb_004879_030 Hb_009403_010--Hb_004879_030 Hb_009403_010--Hb_000813_090 Hb_000974_030 Hb_000974_030 Hb_009403_010--Hb_000974_030 Hb_000325_070 Hb_000325_070 Hb_009403_010--Hb_000325_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.994826 0.0691021 0.505416 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0463364 0.389592

CAGE analysis