Hb_106274_010

Information

Type -
Description -
Location Contig106274: 42-893
Sequence    

Annotation

kegg
ID vvi:104878944
description uncharacterized LOC104878944
nr
ID CAN72427.1
description hypothetical protein VITISV_008825 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BJW1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008825 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_106274_010 0.0 - - hypothetical protein VITISV_008825 [Vitis vinifera]
2 Hb_001231_020 0.0193481531 - - -
3 Hb_005551_030 0.032810261 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
4 Hb_005666_030 0.0471078269 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
5 Hb_004968_090 0.0502649452 - - PREDICTED: uncharacterized protein LOC104882781 [Vitis vinifera]
6 Hb_001691_130 0.0595351013 - - PREDICTED: uncharacterized protein LOC104587431 [Nelumbo nucifera]
7 Hb_011987_010 0.0658299848 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
8 Hb_019135_010 0.0766732453 - - -
9 Hb_000367_150 0.0771412096 - - -
10 Hb_002630_030 0.085268174 - - OSIGBa0132I10.1 [Oryza sativa Indica Group]
11 Hb_007632_140 0.0897633515 - - -
12 Hb_015824_020 0.1080812978 - - -
13 Hb_023386_030 0.1109927819 - - -
14 Hb_007456_030 0.1168877133 - - -
15 Hb_000362_100 0.1169988084 - - -
16 Hb_011716_120 0.1358741096 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
17 Hb_000476_030 0.139203551 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
18 Hb_005029_030 0.1439138459 - - PREDICTED: LOW QUALITY PROTEIN: 36.4 kDa proline-rich protein-like [Sesamum indicum]
19 Hb_002121_070 0.145840569 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000497_310 0.1514978887 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_106274_010 Hb_106274_010 Hb_001231_020 Hb_001231_020 Hb_106274_010--Hb_001231_020 Hb_005551_030 Hb_005551_030 Hb_106274_010--Hb_005551_030 Hb_005666_030 Hb_005666_030 Hb_106274_010--Hb_005666_030 Hb_004968_090 Hb_004968_090 Hb_106274_010--Hb_004968_090 Hb_001691_130 Hb_001691_130 Hb_106274_010--Hb_001691_130 Hb_011987_010 Hb_011987_010 Hb_106274_010--Hb_011987_010 Hb_001231_020--Hb_005551_030 Hb_001231_020--Hb_005666_030 Hb_001231_020--Hb_004968_090 Hb_001231_020--Hb_001691_130 Hb_002630_030 Hb_002630_030 Hb_001231_020--Hb_002630_030 Hb_005551_030--Hb_005666_030 Hb_005551_030--Hb_004968_090 Hb_005551_030--Hb_001691_130 Hb_005551_030--Hb_002630_030 Hb_005666_030--Hb_004968_090 Hb_005666_030--Hb_001691_130 Hb_005666_030--Hb_002630_030 Hb_004968_090--Hb_001691_130 Hb_004968_090--Hb_002630_030 Hb_001691_130--Hb_002630_030 Hb_011987_010--Hb_001231_020 Hb_011987_010--Hb_005551_030 Hb_011987_010--Hb_005666_030 Hb_011987_010--Hb_004968_090 Hb_015824_020 Hb_015824_020 Hb_011987_010--Hb_015824_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0406554 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0394675 0.295981

CAGE analysis