Hb_106321_030

Information

Type -
Description -
Location Contig106321: 15628-19225
Sequence    

Annotation

kegg
ID gmx:100820552
description mitogen-activated protein kinase kinase kinase 1-like
nr
ID XP_012078154.1
description PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
swissprot
ID Q39008
description Mitogen-activated protein kinase kinase kinase 1 OS=Arabidopsis thaliana GN=MEKK1 PE=1 SV=2
trembl
ID A0A067K9I5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12034 PE=4 SV=1
Gene Ontology
ID GO:0016301
description mitogen-activated protein kinase kinase kinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02017: 15690-16260 , PASA_asmbl_02018: 17135-17735 , PASA_asmbl_02020: 18615-18985
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_106321_030 0.0 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
2 Hb_002890_030 0.1276941456 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
3 Hb_003097_190 0.1309845372 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
4 Hb_010068_030 0.1365860632 - - aconitase, putative [Ricinus communis]
5 Hb_000152_560 0.1417068176 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
6 Hb_029866_130 0.1447064036 - - hypothetical protein JCGZ_00035 [Jatropha curcas]
7 Hb_029388_040 0.1492933719 - - PREDICTED: GEM-like protein 5 [Jatropha curcas]
8 Hb_017711_020 0.1500901809 - - PREDICTED: cysteine-rich repeat secretory protein 56 isoform X1 [Jatropha curcas]
9 Hb_000270_140 0.15293948 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
10 Hb_000200_140 0.1547690186 - - PREDICTED: uncharacterized protein LOC104591989 [Nelumbo nucifera]
11 Hb_004316_070 0.1568892134 - - E3 ubiquitin-protein ligase UPL5 -like protein [Gossypium arboreum]
12 Hb_006478_110 0.1603332453 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
13 Hb_008643_060 0.1628743574 - - unnamed protein product [Coffea canephora]
14 Hb_000106_040 0.1644742957 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
15 Hb_001057_010 0.1645400937 - - cation-transporting atpase plant, putative [Ricinus communis]
16 Hb_008725_150 0.1671202485 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
17 Hb_002344_090 0.1674421851 - - PREDICTED: uncharacterized protein LOC105637976 [Jatropha curcas]
18 Hb_002374_440 0.1678470545 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000906_060 0.1688141405 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820 [Populus euphratica]
20 Hb_003517_060 0.1711238744 - - hypothetical protein CISIN_1g044999mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_106321_030 Hb_106321_030 Hb_002890_030 Hb_002890_030 Hb_106321_030--Hb_002890_030 Hb_003097_190 Hb_003097_190 Hb_106321_030--Hb_003097_190 Hb_010068_030 Hb_010068_030 Hb_106321_030--Hb_010068_030 Hb_000152_560 Hb_000152_560 Hb_106321_030--Hb_000152_560 Hb_029866_130 Hb_029866_130 Hb_106321_030--Hb_029866_130 Hb_029388_040 Hb_029388_040 Hb_106321_030--Hb_029388_040 Hb_000861_070 Hb_000861_070 Hb_002890_030--Hb_000861_070 Hb_012654_010 Hb_012654_010 Hb_002890_030--Hb_012654_010 Hb_004204_080 Hb_004204_080 Hb_002890_030--Hb_004204_080 Hb_002890_030--Hb_003097_190 Hb_001057_010 Hb_001057_010 Hb_002890_030--Hb_001057_010 Hb_008643_060 Hb_008643_060 Hb_002890_030--Hb_008643_060 Hb_003097_190--Hb_010068_030 Hb_003097_190--Hb_012654_010 Hb_003097_190--Hb_000152_560 Hb_003097_190--Hb_001057_010 Hb_003097_190--Hb_000861_070 Hb_010068_030--Hb_000152_560 Hb_000422_140 Hb_000422_140 Hb_010068_030--Hb_000422_140 Hb_010068_030--Hb_002890_030 Hb_002499_070 Hb_002499_070 Hb_010068_030--Hb_002499_070 Hb_000258_130 Hb_000258_130 Hb_010068_030--Hb_000258_130 Hb_000614_080 Hb_000614_080 Hb_000152_560--Hb_000614_080 Hb_000152_890 Hb_000152_890 Hb_000152_560--Hb_000152_890 Hb_000152_560--Hb_029866_130 Hb_000152_560--Hb_001057_010 Hb_029866_130--Hb_000152_890 Hb_029866_130--Hb_001057_010 Hb_006478_110 Hb_006478_110 Hb_029866_130--Hb_006478_110 Hb_001454_060 Hb_001454_060 Hb_029866_130--Hb_001454_060 Hb_000413_130 Hb_000413_130 Hb_029866_130--Hb_000413_130 Hb_005214_160 Hb_005214_160 Hb_029866_130--Hb_005214_160 Hb_002374_440 Hb_002374_440 Hb_029388_040--Hb_002374_440 Hb_005228_100 Hb_005228_100 Hb_029388_040--Hb_005228_100 Hb_012340_020 Hb_012340_020 Hb_029388_040--Hb_012340_020 Hb_029388_040--Hb_000152_560 Hb_002168_020 Hb_002168_020 Hb_029388_040--Hb_002168_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.59284 4.61187 0.637128 0.814822 8.28553 4.79502
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.08271 1.95039 3.82334 0.881924 0.633725

CAGE analysis