Hb_106496_010

Information

Type -
Description -
Location Contig106496: 9-1219
Sequence    

Annotation

kegg
ID tcc:TCM_039262
description Gag protease polyprotein
nr
ID XP_012481130.1
description PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A061GQV6
description Gag protease polyprotein OS=Theobroma cacao GN=TCM_039262 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_106496_010 0.0 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
2 Hb_001934_020 0.1063062657 - - PREDICTED: uncharacterized protein LOC105178413 [Sesamum indicum]
3 Hb_000976_370 0.1911371455 - - beta-glucosidase, putative [Ricinus communis]
4 Hb_120112_010 0.195238571 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_008689_020 0.1985777911 - - conserved hypothetical protein [Ricinus communis]
6 Hb_008221_120 0.2528442676 - - PREDICTED: GDSL esterase/lipase At5g63170-like [Jatropha curcas]
7 Hb_005305_190 0.283166625 transcription factor TF Family: NAC -
8 Hb_010589_100 0.2958898468 - - Thioredoxin domain-containing protein 9-like protein [Morus notabilis]
9 Hb_015836_010 0.3011741285 - - -
10 Hb_005952_020 0.3076652178 - - -
11 Hb_005779_070 0.3108847315 - - -
12 Hb_003687_180 0.329811079 - - hypothetical protein JCGZ_02335 [Jatropha curcas]
13 Hb_032533_010 0.339364387 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
14 Hb_001055_040 0.3599801716 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
15 Hb_017214_050 0.3772225433 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
16 Hb_002027_370 0.3791813825 - - conserved hypothetical protein [Ricinus communis]
17 Hb_115326_010 0.3972319655 - - -
18 Hb_074683_010 0.401786972 - - -
19 Hb_151978_010 0.4054340982 - - -
20 Hb_004696_050 0.4078047431 - - -

Gene co-expression network

sample Hb_106496_010 Hb_106496_010 Hb_001934_020 Hb_001934_020 Hb_106496_010--Hb_001934_020 Hb_000976_370 Hb_000976_370 Hb_106496_010--Hb_000976_370 Hb_120112_010 Hb_120112_010 Hb_106496_010--Hb_120112_010 Hb_008689_020 Hb_008689_020 Hb_106496_010--Hb_008689_020 Hb_008221_120 Hb_008221_120 Hb_106496_010--Hb_008221_120 Hb_005305_190 Hb_005305_190 Hb_106496_010--Hb_005305_190 Hb_001934_020--Hb_000976_370 Hb_001934_020--Hb_120112_010 Hb_001934_020--Hb_008689_020 Hb_001934_020--Hb_008221_120 Hb_010589_100 Hb_010589_100 Hb_001934_020--Hb_010589_100 Hb_000976_370--Hb_120112_010 Hb_000976_370--Hb_008689_020 Hb_000976_370--Hb_008221_120 Hb_000976_370--Hb_005305_190 Hb_120112_010--Hb_008689_020 Hb_120112_010--Hb_008221_120 Hb_120112_010--Hb_005305_190 Hb_008689_020--Hb_008221_120 Hb_008689_020--Hb_005305_190 Hb_008221_120--Hb_005305_190 Hb_005952_020 Hb_005952_020 Hb_008221_120--Hb_005952_020 Hb_005779_070 Hb_005779_070 Hb_008221_120--Hb_005779_070 Hb_008221_120--Hb_010589_100 Hb_005305_190--Hb_005779_070 Hb_005305_190--Hb_005952_020 Hb_005305_190--Hb_010589_100 Hb_000445_240 Hb_000445_240 Hb_005305_190--Hb_000445_240 Hb_007140_010 Hb_007140_010 Hb_005305_190--Hb_007140_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0513627 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0370016 0 0 0

CAGE analysis