Hb_106552_020

Information

Type -
Description -
Location Contig106552: 4173-7513
Sequence    

Annotation

kegg
ID rcu:RCOM_0820310
description arginine/serine-rich splicing factor, putative
nr
ID XP_012082225.1
description PREDICTED: serine/arginine-rich splicing factor RS2Z33 isoform X1 [Jatropha curcas]
swissprot
ID Q9FYB7
description Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis thaliana GN=RS2Z32 PE=1 SV=1
trembl
ID A0A067JYR7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16426 PE=4 SV=1
Gene Ontology
ID GO:0000166
description serine arginine-rich splicing factor rs2z33-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02043: 4202-7496 , PASA_asmbl_02044: 4970-7496 , PASA_asmbl_02045: 4249-5455
cDNA
(Sanger)
(ID:Location)		 028_M06.ab1: 4202-6385 , 037_P18.ab1: 4202-6609 , 049_H12.ab1: 4202-6934 , 051_M17.ab1: 4202-6909

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_106552_020 0.0 - - PREDICTED: serine/arginine-rich splicing factor RS2Z33 isoform X1 [Jatropha curcas]
2 Hb_007441_020 0.060043012 - - Rab6 [Hevea brasiliensis]
3 Hb_000163_220 0.0618830741 - - hypothetical protein CISIN_1g022301mg [Citrus sinensis]
4 Hb_000005_220 0.0690170161 - - DNA ligase 1, partial [Glycine soja]
5 Hb_005779_010 0.071346021 - - catalytic, putative [Ricinus communis]
6 Hb_154580_010 0.0727248075 - - hypothetical protein PRUPE_ppa002109mg [Prunus persica]
7 Hb_000731_220 0.0738991678 - - PREDICTED: derlin-2.2 [Jatropha curcas]
8 Hb_002445_100 0.075052124 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 5 isoform X2 [Jatropha curcas]
9 Hb_003096_060 0.0765862482 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
10 Hb_005289_040 0.0769403447 - - poly(A) polymerase, putative [Ricinus communis]
11 Hb_000416_110 0.0780149357 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X2 [Jatropha curcas]
12 Hb_002374_010 0.0781185193 - - PREDICTED: protein translocase subunit SECA2, chloroplastic [Jatropha curcas]
13 Hb_000866_310 0.0782496649 - - PREDICTED: neural Wiskott-Aldrich syndrome protein [Jatropha curcas]
14 Hb_008568_020 0.079037439 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
15 Hb_005460_050 0.0815361457 - - COR413-PM2, putative [Ricinus communis]
16 Hb_000089_120 0.0816050113 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_000260_680 0.0821807154 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
18 Hb_005337_090 0.083084082 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like [Jatropha curcas]
19 Hb_004020_040 0.0841356249 - - PREDICTED: GTP-binding protein At3g49725, chloroplastic [Jatropha curcas]
20 Hb_032202_120 0.0851171584 - - PREDICTED: uncharacterized protein LOC105643059 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_106552_020 Hb_106552_020 Hb_007441_020 Hb_007441_020 Hb_106552_020--Hb_007441_020 Hb_000163_220 Hb_000163_220 Hb_106552_020--Hb_000163_220 Hb_000005_220 Hb_000005_220 Hb_106552_020--Hb_000005_220 Hb_005779_010 Hb_005779_010 Hb_106552_020--Hb_005779_010 Hb_154580_010 Hb_154580_010 Hb_106552_020--Hb_154580_010 Hb_000731_220 Hb_000731_220 Hb_106552_020--Hb_000731_220 Hb_000866_310 Hb_000866_310 Hb_007441_020--Hb_000866_310 Hb_000035_110 Hb_000035_110 Hb_007441_020--Hb_000035_110 Hb_008568_020 Hb_008568_020 Hb_007441_020--Hb_008568_020 Hb_007441_020--Hb_000005_220 Hb_000239_060 Hb_000239_060 Hb_007441_020--Hb_000239_060 Hb_000163_220--Hb_005779_010 Hb_028872_090 Hb_028872_090 Hb_000163_220--Hb_028872_090 Hb_005588_090 Hb_005588_090 Hb_000163_220--Hb_005588_090 Hb_005289_040 Hb_005289_040 Hb_000163_220--Hb_005289_040 Hb_002889_010 Hb_002889_010 Hb_000163_220--Hb_002889_010 Hb_183612_040 Hb_183612_040 Hb_000005_220--Hb_183612_040 Hb_000005_220--Hb_000035_110 Hb_005337_090 Hb_005337_090 Hb_000005_220--Hb_005337_090 Hb_002445_100 Hb_002445_100 Hb_000005_220--Hb_002445_100 Hb_000005_220--Hb_005779_010 Hb_004994_010 Hb_004994_010 Hb_005779_010--Hb_004994_010 Hb_005779_010--Hb_002445_100 Hb_000816_250 Hb_000816_250 Hb_005779_010--Hb_000816_250 Hb_003861_050 Hb_003861_050 Hb_005779_010--Hb_003861_050 Hb_002067_030 Hb_002067_030 Hb_154580_010--Hb_002067_030 Hb_154580_010--Hb_008568_020 Hb_003096_060 Hb_003096_060 Hb_154580_010--Hb_003096_060 Hb_000645_170 Hb_000645_170 Hb_154580_010--Hb_000645_170 Hb_154580_010--Hb_005289_040 Hb_026980_020 Hb_026980_020 Hb_154580_010--Hb_026980_020 Hb_007062_040 Hb_007062_040 Hb_000731_220--Hb_007062_040 Hb_001922_150 Hb_001922_150 Hb_000731_220--Hb_001922_150 Hb_183433_010 Hb_183433_010 Hb_000731_220--Hb_183433_010 Hb_000416_110 Hb_000416_110 Hb_000731_220--Hb_000416_110 Hb_000087_060 Hb_000087_060 Hb_000731_220--Hb_000087_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.3263 68.7714 83.6124 57.3446 51.638 75.0769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.9537 57.3591 24.7084 70.4949 34.0154

CAGE analysis