Hb_106552_050

Information

Type -
Description -
Location Contig106552: 11283-12921
Sequence    

Annotation

kegg
ID egr:104426511
description uncharacterized LOC104426511
nr
ID XP_012082229.1
description PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K1U6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16427 PE=4 SV=1
Gene Ontology
ID GO:0016021
description PREDICTED: uncharacterized protein LOC105642134

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02048: 11319-12918 , PASA_asmbl_02049: 13908-14413
cDNA
(Sanger)
(ID:Location)		 019_C05.ab1: 11483-12893 , 045_E07.ab1: 11404-12893

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_106552_050 0.0 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
2 Hb_008803_090 0.0608559969 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
3 Hb_000976_320 0.0631374649 - - UPF0061 protein azo1574 [Morus notabilis]
4 Hb_001926_030 0.0696670117 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
5 Hb_002192_080 0.069791854 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
6 Hb_000808_250 0.0715599486 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
7 Hb_004055_150 0.0721062809 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000368_020 0.0740192841 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
9 Hb_003018_060 0.0758389359 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
10 Hb_000477_030 0.0768388704 - - PREDICTED: boron transporter 4-like [Jatropha curcas]
11 Hb_000207_130 0.0781904785 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
12 Hb_054865_100 0.0785079617 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
13 Hb_000926_310 0.0788409275 - - uncharacterized protein LOC100500241 [Glycine max]
14 Hb_006620_020 0.0792131698 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
15 Hb_011942_080 0.0793957318 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
16 Hb_007164_020 0.0794147673 - - hypothetical protein glysoja_025872 [Glycine soja]
17 Hb_003464_050 0.0800070685 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
18 Hb_000465_470 0.08061537 - - unknown [Picea sitchensis]
19 Hb_003849_060 0.0808370544 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
20 Hb_000394_190 0.0810795782 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_106552_050 Hb_106552_050 Hb_008803_090 Hb_008803_090 Hb_106552_050--Hb_008803_090 Hb_000976_320 Hb_000976_320 Hb_106552_050--Hb_000976_320 Hb_001926_030 Hb_001926_030 Hb_106552_050--Hb_001926_030 Hb_002192_080 Hb_002192_080 Hb_106552_050--Hb_002192_080 Hb_000808_250 Hb_000808_250 Hb_106552_050--Hb_000808_250 Hb_004055_150 Hb_004055_150 Hb_106552_050--Hb_004055_150 Hb_008803_090--Hb_001926_030 Hb_001635_170 Hb_001635_170 Hb_008803_090--Hb_001635_170 Hb_001595_030 Hb_001595_030 Hb_008803_090--Hb_001595_030 Hb_005532_050 Hb_005532_050 Hb_008803_090--Hb_005532_050 Hb_001677_210 Hb_001677_210 Hb_008803_090--Hb_001677_210 Hb_011942_080 Hb_011942_080 Hb_000976_320--Hb_011942_080 Hb_008864_110 Hb_008864_110 Hb_000976_320--Hb_008864_110 Hb_000768_110 Hb_000768_110 Hb_000976_320--Hb_000768_110 Hb_000322_100 Hb_000322_100 Hb_000976_320--Hb_000322_100 Hb_000976_320--Hb_001677_210 Hb_001926_030--Hb_004055_150 Hb_000879_200 Hb_000879_200 Hb_001926_030--Hb_000879_200 Hb_002686_250 Hb_002686_250 Hb_001926_030--Hb_002686_250 Hb_006620_020 Hb_006620_020 Hb_001926_030--Hb_006620_020 Hb_000853_230 Hb_000853_230 Hb_001926_030--Hb_000853_230 Hb_000010_400 Hb_000010_400 Hb_001926_030--Hb_000010_400 Hb_012389_020 Hb_012389_020 Hb_002192_080--Hb_012389_020 Hb_000261_250 Hb_000261_250 Hb_002192_080--Hb_000261_250 Hb_000107_190 Hb_000107_190 Hb_002192_080--Hb_000107_190 Hb_003849_060 Hb_003849_060 Hb_002192_080--Hb_003849_060 Hb_032920_060 Hb_032920_060 Hb_002192_080--Hb_032920_060 Hb_006623_020 Hb_006623_020 Hb_000808_250--Hb_006623_020 Hb_000808_250--Hb_003849_060 Hb_021422_010 Hb_021422_010 Hb_000808_250--Hb_021422_010 Hb_000359_330 Hb_000359_330 Hb_000808_250--Hb_000359_330 Hb_178968_100 Hb_178968_100 Hb_000808_250--Hb_178968_100 Hb_004055_150--Hb_002686_250 Hb_004055_150--Hb_000853_230 Hb_004055_150--Hb_006620_020 Hb_006960_050 Hb_006960_050 Hb_004055_150--Hb_006960_050 Hb_005993_050 Hb_005993_050 Hb_004055_150--Hb_005993_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
88.3247 48.6964 49.9952 32.4828 81.5138 75.0047
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.7055 54.0429 45.4807 26.241 19.5848

CAGE analysis