Hb_106595_010

Information

Type -
Description -
Location Contig106595: 247-405
Sequence    

Annotation

kegg
ID pop:POPTR_0018s08800g
description hypothetical protein
nr
ID KJB18676.1
description hypothetical protein B456_003G065300 [Gossypium raimondii]
swissprot
ID Q9C821
description Proline-rich receptor-like protein kinase PERK15 OS=Arabidopsis thaliana GN=PERK15 PE=2 SV=1
trembl
ID A0A0D2QP33
description Gossypium raimondii chromosome 3, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_003G065300 PE=4 SV=1
Gene Ontology
ID GO:0004672
description proline-rich receptor-like protein kinase perk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_106595_010 0.0 - - hypothetical protein B456_003G065300 [Gossypium raimondii]
2 Hb_044724_020 0.0118585947 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Fragaria vesca subsp. vesca]
3 Hb_128894_010 0.0153110486 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_000215_380 0.0229689075 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
5 Hb_007328_020 0.0243276536 - - -
6 Hb_000563_370 0.0251218491 - - hypothetical protein JCGZ_18919 [Jatropha curcas]
7 Hb_034558_010 0.0310857705 - - -
8 Hb_007264_050 0.0355162057 - - -
9 Hb_064583_010 0.0520451308 - - PREDICTED: germin-like protein subfamily 1 member 7 [Vitis vinifera]
10 Hb_001766_090 0.0568708758 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
11 Hb_099085_010 0.0670069879 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
12 Hb_030312_060 0.0691762736 - - PREDICTED: uncharacterized protein LOC105634226 [Jatropha curcas]
13 Hb_007658_030 0.0696295187 - - PREDICTED: lupeol synthase-like isoform X1 [Populus euphratica]
14 Hb_030593_010 0.0761216505 - - hypothetical protein JCGZ_06063 [Jatropha curcas]
15 Hb_000484_050 0.076872426 - - hypothetical protein CICLE_v10028549mg [Citrus clementina]
16 Hb_023827_010 0.0933293102 - - Cucumber peeling cupredoxin, putative [Ricinus communis]
17 Hb_011909_130 0.0945852831 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Populus euphratica]
18 Hb_000016_290 0.09625281 - - multidrug resistance pump, putative [Ricinus communis]
19 Hb_009740_010 0.0988988079 - - receptor-kinase, putative [Ricinus communis]
20 Hb_005050_010 0.1097992597 - - hypothetical protein JCGZ_04974 [Jatropha curcas]

Gene co-expression network

sample Hb_106595_010 Hb_106595_010 Hb_044724_020 Hb_044724_020 Hb_106595_010--Hb_044724_020 Hb_128894_010 Hb_128894_010 Hb_106595_010--Hb_128894_010 Hb_000215_380 Hb_000215_380 Hb_106595_010--Hb_000215_380 Hb_007328_020 Hb_007328_020 Hb_106595_010--Hb_007328_020 Hb_000563_370 Hb_000563_370 Hb_106595_010--Hb_000563_370 Hb_034558_010 Hb_034558_010 Hb_106595_010--Hb_034558_010 Hb_044724_020--Hb_000215_380 Hb_044724_020--Hb_007328_020 Hb_044724_020--Hb_000563_370 Hb_044724_020--Hb_128894_010 Hb_007264_050 Hb_007264_050 Hb_044724_020--Hb_007264_050 Hb_128894_010--Hb_034558_010 Hb_128894_010--Hb_000215_380 Hb_128894_010--Hb_007328_020 Hb_128894_010--Hb_000563_370 Hb_000215_380--Hb_007328_020 Hb_000215_380--Hb_000563_370 Hb_000215_380--Hb_007264_050 Hb_064583_010 Hb_064583_010 Hb_000215_380--Hb_064583_010 Hb_007328_020--Hb_000563_370 Hb_007328_020--Hb_064583_010 Hb_007328_020--Hb_007264_050 Hb_000563_370--Hb_064583_010 Hb_000563_370--Hb_007264_050 Hb_007658_030 Hb_007658_030 Hb_034558_010--Hb_007658_030 Hb_001766_090 Hb_001766_090 Hb_034558_010--Hb_001766_090 Hb_034558_010--Hb_044724_020 Hb_000484_050 Hb_000484_050 Hb_034558_010--Hb_000484_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 48.0289 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.89231 0

CAGE analysis