Hb_106596_010

Information

Type -
Description -
Location Contig106596: 17-313
Sequence    

Annotation

kegg
ID rcu:RCOM_1192130
description hypothetical protein
nr
ID XP_002520368.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S2Z9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1192130 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_106596_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_054541_010 0.2199104409 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
3 Hb_035436_010 0.2309058922 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
4 Hb_025905_020 0.2348351189 - - major allergen Pru ar 1-like [Jatropha curcas]
5 Hb_114079_010 0.2377153018 - - hypothetical protein CICLE_v10008147mg [Citrus clementina]
6 Hb_017014_020 0.2403134755 - - -
7 Hb_162090_010 0.2461253588 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
8 Hb_060054_010 0.2518325149 - - NADH-ubiquinone oxidoreductase subunit B17.2, putative [Ricinus communis]
9 Hb_022614_010 0.2519687755 - - -
10 Hb_006794_010 0.2539498216 - - elicitor-responsive protein [Hevea brasiliensis]
11 Hb_010367_020 0.2578009004 - - hypothetical protein POPTR_0009s054801g, partial [Populus trichocarpa]
12 Hb_000033_070 0.265986365 - - unnamed protein product [Oryza sativa Japonica Group]
13 Hb_106873_020 0.269309842 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
14 Hb_003025_060 0.2709539189 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
15 Hb_053345_010 0.2711911182 - - -
16 Hb_158296_010 0.2715114645 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
17 Hb_177152_010 0.2730108407 - - glycosyl hydrolase family 38 family protein [Populus trichocarpa]
18 Hb_041025_010 0.278006867 - - PREDICTED: uncharacterized protein LOC105635593 [Jatropha curcas]
19 Hb_081815_010 0.2784678485 - - PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
20 Hb_000025_080 0.2810619985 - - -

Gene co-expression network

sample Hb_106596_010 Hb_106596_010 Hb_054541_010 Hb_054541_010 Hb_106596_010--Hb_054541_010 Hb_035436_010 Hb_035436_010 Hb_106596_010--Hb_035436_010 Hb_025905_020 Hb_025905_020 Hb_106596_010--Hb_025905_020 Hb_114079_010 Hb_114079_010 Hb_106596_010--Hb_114079_010 Hb_017014_020 Hb_017014_020 Hb_106596_010--Hb_017014_020 Hb_162090_010 Hb_162090_010 Hb_106596_010--Hb_162090_010 Hb_054541_010--Hb_035436_010 Hb_177152_010 Hb_177152_010 Hb_054541_010--Hb_177152_010 Hb_013358_100 Hb_013358_100 Hb_054541_010--Hb_013358_100 Hb_000422_130 Hb_000422_130 Hb_054541_010--Hb_000422_130 Hb_004525_080 Hb_004525_080 Hb_054541_010--Hb_004525_080 Hb_068569_010 Hb_068569_010 Hb_054541_010--Hb_068569_010 Hb_035436_010--Hb_013358_100 Hb_010964_020 Hb_010964_020 Hb_035436_010--Hb_010964_020 Hb_035436_010--Hb_177152_010 Hb_178620_010 Hb_178620_010 Hb_035436_010--Hb_178620_010 Hb_035436_010--Hb_025905_020 Hb_025905_020--Hb_010964_020 Hb_025905_020--Hb_178620_010 Hb_134488_010 Hb_134488_010 Hb_025905_020--Hb_134488_010 Hb_025905_020--Hb_114079_010 Hb_041025_010 Hb_041025_010 Hb_025905_020--Hb_041025_010 Hb_000082_020 Hb_000082_020 Hb_114079_010--Hb_000082_020 Hb_183522_010 Hb_183522_010 Hb_114079_010--Hb_183522_010 Hb_114079_010--Hb_041025_010 Hb_003030_040 Hb_003030_040 Hb_114079_010--Hb_003030_040 Hb_114079_010--Hb_010964_020 Hb_022614_010 Hb_022614_010 Hb_017014_020--Hb_022614_010 Hb_017014_020--Hb_162090_010 Hb_006162_020 Hb_006162_020 Hb_017014_020--Hb_006162_020 Hb_009083_030 Hb_009083_030 Hb_017014_020--Hb_009083_030 Hb_188313_010 Hb_188313_010 Hb_017014_020--Hb_188313_010 Hb_000025_080 Hb_000025_080 Hb_017014_020--Hb_000025_080 Hb_162090_010--Hb_022614_010 Hb_162090_010--Hb_006162_020 Hb_005107_020 Hb_005107_020 Hb_162090_010--Hb_005107_020 Hb_000953_120 Hb_000953_120 Hb_162090_010--Hb_000953_120 Hb_041601_010 Hb_041601_010 Hb_162090_010--Hb_041601_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.24327 0.820294 1.98032 12.4081 0 8.55081
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.368614 0.500093 0.344037 0

CAGE analysis