Hb_106724_020

Information

Type -
Description -
Location Contig106724: 4117-12314
Sequence    

Annotation

kegg
ID pop:POPTR_0014s13810g
description POPTRDRAFT_824237; putative ARP2/3 protein complex subunit p41
nr
ID XP_011033727.1
description PREDICTED: actin-related protein 2/3 complex subunit 1A-like isoform X1 [Populus euphratica]
swissprot
ID O80856
description Actin-related protein 2/3 complex subunit 1A OS=Arabidopsis thaliana GN=ARPC1A PE=2 SV=1
trembl
ID B9IA44
description Putative ARP2/3 protein complex subunit p41 OS=Populus trichocarpa GN=POPTR_0014s13810g PE=4 SV=1
Gene Ontology
ID GO:0005885
description actin-related protein 2 3 complex subunit 1a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02090: 4153-12160 , PASA_asmbl_02091: 7556-8310
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_106724_020 0.0 - - PREDICTED: actin-related protein 2/3 complex subunit 1A-like isoform X1 [Populus euphratica]
2 Hb_000630_050 0.0596758127 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003813_130 0.0699465101 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
4 Hb_004055_030 0.0706317816 - - casein kinase, putative [Ricinus communis]
5 Hb_001102_140 0.0723758323 - - PREDICTED: methyl-CpG-binding domain-containing protein 2-like [Jatropha curcas]
6 Hb_000808_280 0.0728984263 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001454_130 0.0793571202 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
8 Hb_003693_070 0.0837588736 - - PREDICTED: S-(hydroxymethyl)glutathione dehydrogenase [Jatropha curcas]
9 Hb_006827_020 0.0849476275 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007594_130 0.086279926 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
11 Hb_010931_120 0.0879098924 - - myosin heavy chain-related family protein [Populus trichocarpa]
12 Hb_001124_160 0.0881047215 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
13 Hb_000085_160 0.0899938664 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
14 Hb_011671_430 0.0907112856 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
15 Hb_006922_100 0.0908239559 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
16 Hb_145314_010 0.0911808485 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
17 Hb_004310_130 0.0913288778 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
18 Hb_000260_220 0.0913920067 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
19 Hb_007218_080 0.0915810297 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
20 Hb_001199_020 0.0916057026 - - hypothetical protein JCGZ_25565 [Jatropha curcas]

Gene co-expression network

sample Hb_106724_020 Hb_106724_020 Hb_000630_050 Hb_000630_050 Hb_106724_020--Hb_000630_050 Hb_003813_130 Hb_003813_130 Hb_106724_020--Hb_003813_130 Hb_004055_030 Hb_004055_030 Hb_106724_020--Hb_004055_030 Hb_001102_140 Hb_001102_140 Hb_106724_020--Hb_001102_140 Hb_000808_280 Hb_000808_280 Hb_106724_020--Hb_000808_280 Hb_001454_130 Hb_001454_130 Hb_106724_020--Hb_001454_130 Hb_000630_050--Hb_000808_280 Hb_000085_160 Hb_000085_160 Hb_000630_050--Hb_000085_160 Hb_006827_020 Hb_006827_020 Hb_000630_050--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_000630_050--Hb_007317_110 Hb_000011_200 Hb_000011_200 Hb_000630_050--Hb_000011_200 Hb_003813_130--Hb_006827_020 Hb_011930_160 Hb_011930_160 Hb_003813_130--Hb_011930_160 Hb_103012_010 Hb_103012_010 Hb_003813_130--Hb_103012_010 Hb_001946_010 Hb_001946_010 Hb_003813_130--Hb_001946_010 Hb_000523_050 Hb_000523_050 Hb_003813_130--Hb_000523_050 Hb_003813_130--Hb_004055_030 Hb_006922_100 Hb_006922_100 Hb_004055_030--Hb_006922_100 Hb_007441_120 Hb_007441_120 Hb_004055_030--Hb_007441_120 Hb_001124_160 Hb_001124_160 Hb_004055_030--Hb_001124_160 Hb_000445_420 Hb_000445_420 Hb_004055_030--Hb_000445_420 Hb_001199_020 Hb_001199_020 Hb_004055_030--Hb_001199_020 Hb_093084_050 Hb_093084_050 Hb_001102_140--Hb_093084_050 Hb_000656_110 Hb_000656_110 Hb_001102_140--Hb_000656_110 Hb_005054_290 Hb_005054_290 Hb_001102_140--Hb_005054_290 Hb_000000_460 Hb_000000_460 Hb_001102_140--Hb_000000_460 Hb_002685_110 Hb_002685_110 Hb_001102_140--Hb_002685_110 Hb_000808_280--Hb_000085_160 Hb_003693_070 Hb_003693_070 Hb_000808_280--Hb_003693_070 Hb_000083_250 Hb_000083_250 Hb_000808_280--Hb_000083_250 Hb_000120_060 Hb_000120_060 Hb_000808_280--Hb_000120_060 Hb_000120_670 Hb_000120_670 Hb_000808_280--Hb_000120_670 Hb_001454_130--Hb_000083_250 Hb_001454_130--Hb_000630_050 Hb_145314_010 Hb_145314_010 Hb_001454_130--Hb_145314_010 Hb_001454_130--Hb_000808_280 Hb_150986_010 Hb_150986_010 Hb_001454_130--Hb_150986_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.074 22.2153 14.9452 35.4688 40.4535 48.0446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.7245 28.1199 32.1678 28.5037 15.8047

CAGE analysis