Hb_106873_020

Information

Type -
Description -
Location Contig106873: 3202-3429
Sequence    

Annotation

kegg
ID rcu:RCOM_0906870
description hypothetical protein
nr
ID XP_012092396.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
swissprot
ID Q9ZT07
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana GN=RKS1 PE=3 SV=3
trembl
ID A0A067JMV5
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_21315 PE=3 SV=1
Gene Ontology
ID GO:0004672
description s-locus-specific glycoprotein s13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_106873_020 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
2 Hb_000589_230 0.1139012541 - - unknown [Picea sitchensis]
3 Hb_060054_010 0.1450784701 - - NADH-ubiquinone oxidoreductase subunit B17.2, putative [Ricinus communis]
4 Hb_003025_060 0.1788992477 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
5 Hb_148658_010 0.2105229855 - - -
6 Hb_081815_010 0.2162602333 - - PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
7 Hb_005723_070 0.2238160723 - - hypothetical protein CISIN_1g011514mg [Citrus sinensis]
8 Hb_002126_020 0.2257892474 - - ferrochelatase [Medicago truncatula]
9 Hb_000876_010 0.2317971199 - - Uncharacterized protein TCM_022272 [Theobroma cacao]
10 Hb_116367_010 0.2431873784 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Pyrus x bretschneideri]
11 Hb_000066_180 0.250049068 - - hypothetical protein POPTR_0008s02710g [Populus trichocarpa]
12 Hb_002078_190 0.2506260918 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000193_030 0.2543575271 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
14 Hb_025905_020 0.254934874 - - major allergen Pru ar 1-like [Jatropha curcas]
15 Hb_134488_010 0.2558399125 - - -
16 Hb_027287_010 0.2603779974 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000340_330 0.2611599178 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Jatropha curcas]
18 Hb_002450_130 0.2629026271 - - hypothetical protein JCGZ_06565 [Jatropha curcas]
19 Hb_000130_170 0.265741787 - - -
20 Hb_060458_010 0.2665242221 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_106873_020 Hb_106873_020 Hb_000589_230 Hb_000589_230 Hb_106873_020--Hb_000589_230 Hb_060054_010 Hb_060054_010 Hb_106873_020--Hb_060054_010 Hb_003025_060 Hb_003025_060 Hb_106873_020--Hb_003025_060 Hb_148658_010 Hb_148658_010 Hb_106873_020--Hb_148658_010 Hb_081815_010 Hb_081815_010 Hb_106873_020--Hb_081815_010 Hb_005723_070 Hb_005723_070 Hb_106873_020--Hb_005723_070 Hb_000589_230--Hb_060054_010 Hb_000589_230--Hb_003025_060 Hb_000589_230--Hb_081815_010 Hb_001418_060 Hb_001418_060 Hb_000589_230--Hb_001418_060 Hb_115045_010 Hb_115045_010 Hb_000589_230--Hb_115045_010 Hb_025905_020 Hb_025905_020 Hb_060054_010--Hb_025905_020 Hb_060054_010--Hb_003025_060 Hb_000258_360 Hb_000258_360 Hb_060054_010--Hb_000258_360 Hb_060054_010--Hb_001418_060 Hb_000876_010 Hb_000876_010 Hb_003025_060--Hb_000876_010 Hb_003025_060--Hb_005723_070 Hb_002126_020 Hb_002126_020 Hb_003025_060--Hb_002126_020 Hb_002078_190 Hb_002078_190 Hb_148658_010--Hb_002078_190 Hb_027287_010 Hb_027287_010 Hb_148658_010--Hb_027287_010 Hb_157968_010 Hb_157968_010 Hb_148658_010--Hb_157968_010 Hb_000066_180 Hb_000066_180 Hb_148658_010--Hb_000066_180 Hb_116367_010 Hb_116367_010 Hb_148658_010--Hb_116367_010 Hb_163132_010 Hb_163132_010 Hb_081815_010--Hb_163132_010 Hb_007356_010 Hb_007356_010 Hb_081815_010--Hb_007356_010 Hb_007290_020 Hb_007290_020 Hb_081815_010--Hb_007290_020 Hb_068804_060 Hb_068804_060 Hb_081815_010--Hb_068804_060 Hb_081815_010--Hb_005723_070 Hb_000300_140 Hb_000300_140 Hb_081815_010--Hb_000300_140 Hb_000130_170 Hb_000130_170 Hb_005723_070--Hb_000130_170 Hb_005723_070--Hb_000876_010 Hb_002972_060 Hb_002972_060 Hb_005723_070--Hb_002972_060 Hb_002450_130 Hb_002450_130 Hb_005723_070--Hb_002450_130 Hb_033312_110 Hb_033312_110 Hb_005723_070--Hb_033312_110 Hb_005723_070--Hb_000300_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.0819 2.17851 0.854955 12.4868 0.832356 16.3556
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis