Hb_107039_010

Information

Type -
Description -
Location Contig107039: 8092-10365
Sequence    

Annotation

kegg
ID gmx:100810816
description quinone oxidoreductase-like protein At1g23740, chloroplastic-like
nr
ID KHN26872.1
description Quinone oxidoreductase-like protein, chloroplastic [Glycine soja]
swissprot
ID K4BW79
description 2-methylene-furan-3-one reductase OS=Solanum lycopersicum GN=EO PE=1 SV=1
trembl
ID A0A0B2R4U7
description Quinone oxidoreductase-like protein, chloroplastic OS=Glycine soja GN=glysoja_035511 PE=4 SV=1
Gene Ontology
ID GO:0009526
description 2-methylene-furan-3-one reductase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02233: 9038-9495
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_107039_010 0.0 - - Quinone oxidoreductase-like protein, chloroplastic [Glycine soja]
2 Hb_000056_120 0.1558056204 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
3 Hb_004531_090 0.1614070841 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
4 Hb_000018_160 0.1625876152 - - nitrate transporter, putative [Ricinus communis]
5 Hb_000365_350 0.1660597867 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
6 Hb_004032_460 0.1673749809 - - -
7 Hb_000173_370 0.1676631956 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
8 Hb_000156_030 0.1713688982 - - conserved hypothetical protein [Ricinus communis]
9 Hb_060437_010 0.1724574871 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
10 Hb_000088_180 0.1735255988 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
11 Hb_031862_170 0.1750463927 - - immunophilin, putative [Ricinus communis]
12 Hb_000050_120 0.1754144658 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
13 Hb_005568_070 0.1763708116 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
14 Hb_006076_020 0.1779041282 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
15 Hb_001034_020 0.1782017202 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
16 Hb_002025_140 0.1810561274 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
17 Hb_000173_210 0.1811944001 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
18 Hb_001178_060 0.1836346571 - - PREDICTED: protein BUD31 homolog 2 isoform X1 [Jatropha curcas]
19 Hb_000211_090 0.184224947 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
20 Hb_011457_110 0.1847507487 - - PREDICTED: protein NETWORKED 1D [Jatropha curcas]

Gene co-expression network

sample Hb_107039_010 Hb_107039_010 Hb_000056_120 Hb_000056_120 Hb_107039_010--Hb_000056_120 Hb_004531_090 Hb_004531_090 Hb_107039_010--Hb_004531_090 Hb_000018_160 Hb_000018_160 Hb_107039_010--Hb_000018_160 Hb_000365_350 Hb_000365_350 Hb_107039_010--Hb_000365_350 Hb_004032_460 Hb_004032_460 Hb_107039_010--Hb_004032_460 Hb_000173_370 Hb_000173_370 Hb_107039_010--Hb_000173_370 Hb_000056_120--Hb_000365_350 Hb_000565_020 Hb_000565_020 Hb_000056_120--Hb_000565_020 Hb_000156_030 Hb_000156_030 Hb_000056_120--Hb_000156_030 Hb_061256_030 Hb_061256_030 Hb_000056_120--Hb_061256_030 Hb_001825_010 Hb_001825_010 Hb_000056_120--Hb_001825_010 Hb_000566_140 Hb_000566_140 Hb_000056_120--Hb_000566_140 Hb_000779_040 Hb_000779_040 Hb_004531_090--Hb_000779_040 Hb_002025_140 Hb_002025_140 Hb_004531_090--Hb_002025_140 Hb_000291_120 Hb_000291_120 Hb_004531_090--Hb_000291_120 Hb_000211_090 Hb_000211_090 Hb_004531_090--Hb_000211_090 Hb_000573_040 Hb_000573_040 Hb_004531_090--Hb_000573_040 Hb_001034_020 Hb_001034_020 Hb_004531_090--Hb_001034_020 Hb_000211_080 Hb_000211_080 Hb_000018_160--Hb_000211_080 Hb_035360_010 Hb_035360_010 Hb_000018_160--Hb_035360_010 Hb_005568_070 Hb_005568_070 Hb_000018_160--Hb_005568_070 Hb_000619_070 Hb_000619_070 Hb_000018_160--Hb_000619_070 Hb_000544_120 Hb_000544_120 Hb_000018_160--Hb_000544_120 Hb_000161_100 Hb_000161_100 Hb_000018_160--Hb_000161_100 Hb_012807_120 Hb_012807_120 Hb_000365_350--Hb_012807_120 Hb_000050_120 Hb_000050_120 Hb_000365_350--Hb_000050_120 Hb_000088_180 Hb_000088_180 Hb_000365_350--Hb_000088_180 Hb_000365_350--Hb_004032_460 Hb_098315_100 Hb_098315_100 Hb_000365_350--Hb_098315_100 Hb_006478_070 Hb_006478_070 Hb_000365_350--Hb_006478_070 Hb_004032_460--Hb_000088_180 Hb_004032_460--Hb_000173_370 Hb_000300_540 Hb_000300_540 Hb_004032_460--Hb_000300_540 Hb_000849_150 Hb_000849_150 Hb_004032_460--Hb_000849_150 Hb_000363_340 Hb_000363_340 Hb_004032_460--Hb_000363_340 Hb_000173_370--Hb_002025_140 Hb_000173_370--Hb_000088_180 Hb_000173_370--Hb_004531_090 Hb_000173_370--Hb_000573_040 Hb_000173_210 Hb_000173_210 Hb_000173_370--Hb_000173_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8031 2.37811 0.069675 1.65892 10.7079 6.46433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.83775 0.908503 2.04836 0.0830928 0.758746

CAGE analysis