Hb_107078_010

Information

Type -
Description -
Location Contig107078: 133-676
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_107078_010 0.0 - - -
2 Hb_011918_030 0.1246320746 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
3 Hb_008173_130 0.1272719229 - - PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]
4 Hb_000260_240 0.1331977571 - - hypothetical protein JCGZ_00622 [Jatropha curcas]
5 Hb_001638_120 0.1360889782 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
6 Hb_000020_080 0.1380368553 transcription factor TF Family: MYB hypothetical protein JCGZ_09080 [Jatropha curcas]
7 Hb_000076_090 0.1449907362 - - protein with unknown function [Ricinus communis]
8 Hb_000538_250 0.1451351633 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650 [Jatropha curcas]
9 Hb_000042_390 0.148306746 - - PREDICTED: cyclin-dependent kinase inhibitor 7 [Jatropha curcas]
10 Hb_000046_520 0.1495056752 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
11 Hb_003688_220 0.1504509765 - - unknown [Populus trichocarpa]
12 Hb_004846_230 0.1546216054 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
13 Hb_000110_240 0.1602663264 - - PREDICTED: uncharacterized protein LOC105642006 isoform X3 [Jatropha curcas]
14 Hb_000392_240 0.1612024842 - - DNA binding protein, putative [Ricinus communis]
15 Hb_001922_110 0.164292204 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003020_070 0.1648623779 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
17 Hb_004218_050 0.165653421 - - annexin [Manihot esculenta]
18 Hb_001343_120 0.1670696825 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000308_010 0.1674870001 - - PREDICTED: uncharacterized protein LOC105639684 [Jatropha curcas]
20 Hb_000032_200 0.1685121548 - - PREDICTED: probable polygalacturonase [Jatropha curcas]

Gene co-expression network

sample Hb_107078_010 Hb_107078_010 Hb_011918_030 Hb_011918_030 Hb_107078_010--Hb_011918_030 Hb_008173_130 Hb_008173_130 Hb_107078_010--Hb_008173_130 Hb_000260_240 Hb_000260_240 Hb_107078_010--Hb_000260_240 Hb_001638_120 Hb_001638_120 Hb_107078_010--Hb_001638_120 Hb_000020_080 Hb_000020_080 Hb_107078_010--Hb_000020_080 Hb_000076_090 Hb_000076_090 Hb_107078_010--Hb_000076_090 Hb_011918_030--Hb_001638_120 Hb_011918_030--Hb_008173_130 Hb_003688_220 Hb_003688_220 Hb_011918_030--Hb_003688_220 Hb_000134_260 Hb_000134_260 Hb_011918_030--Hb_000134_260 Hb_001366_390 Hb_001366_390 Hb_011918_030--Hb_001366_390 Hb_008173_130--Hb_000260_240 Hb_000308_010 Hb_000308_010 Hb_008173_130--Hb_000308_010 Hb_028487_040 Hb_028487_040 Hb_008173_130--Hb_028487_040 Hb_008173_130--Hb_003688_220 Hb_001898_100 Hb_001898_100 Hb_000260_240--Hb_001898_100 Hb_001579_190 Hb_001579_190 Hb_000260_240--Hb_001579_190 Hb_034585_070 Hb_034585_070 Hb_000260_240--Hb_034585_070 Hb_001019_070 Hb_001019_070 Hb_000260_240--Hb_001019_070 Hb_004223_080 Hb_004223_080 Hb_001638_120--Hb_004223_080 Hb_001025_140 Hb_001025_140 Hb_001638_120--Hb_001025_140 Hb_001638_120--Hb_003688_220 Hb_001638_120--Hb_000134_260 Hb_012753_150 Hb_012753_150 Hb_000020_080--Hb_012753_150 Hb_000388_040 Hb_000388_040 Hb_000020_080--Hb_000388_040 Hb_006060_010 Hb_006060_010 Hb_000020_080--Hb_006060_010 Hb_004218_050 Hb_004218_050 Hb_000020_080--Hb_004218_050 Hb_007545_110 Hb_007545_110 Hb_000020_080--Hb_007545_110 Hb_002301_210 Hb_002301_210 Hb_000076_090--Hb_002301_210 Hb_000136_020 Hb_000136_020 Hb_000076_090--Hb_000136_020 Hb_001975_050 Hb_001975_050 Hb_000076_090--Hb_001975_050 Hb_001250_040 Hb_001250_040 Hb_000076_090--Hb_001250_040 Hb_000093_140 Hb_000093_140 Hb_000076_090--Hb_000093_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.96084 43.5534 159.956 34.4917 2.25044 8.04841
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.74104 1.094 2.90587 8.10247 49.4295

CAGE analysis