Hb_107201_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig107201: 3018-4424
Sequence    

Annotation

kegg
ID cit:102623211
description putative disease resistance protein RGA1-like
nr
ID KDP43125.1
description hypothetical protein JCGZ_26658 [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A067LF36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26658 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance protein rga3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_107201_010 0.0 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
2 Hb_000140_190 0.1630296739 - - acc synthase, putative [Ricinus communis]
3 Hb_029510_110 0.1863140201 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
4 Hb_001004_100 0.1889907704 - - ATP binding protein, putative [Ricinus communis]
5 Hb_061195_010 0.1953382291 - - Galactose oxidase precursor, putative [Ricinus communis]
6 Hb_012239_080 0.202909022 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Jatropha curcas]
7 Hb_000471_080 0.2039551473 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
8 Hb_000748_070 0.208477628 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
9 Hb_002849_150 0.2086591261 - - hypothetical protein JCGZ_14367 [Jatropha curcas]
10 Hb_002006_140 0.2143533136 transcription factor TF Family: ERF hypothetical protein POPTR_0012s11030g [Populus trichocarpa]
11 Hb_012753_190 0.2227282688 - - PREDICTED: protein HAPLESS 2 [Populus euphratica]
12 Hb_004195_240 0.2268484111 - - Peroxidase 72 precursor, putative [Ricinus communis]
13 Hb_007439_010 0.2269982719 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
14 Hb_011671_420 0.2291288496 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
15 Hb_073171_020 0.2293163992 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
16 Hb_002057_010 0.2312925807 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
17 Hb_001003_020 0.233047045 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
18 Hb_004222_010 0.2334475145 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
19 Hb_000466_090 0.2371569856 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X1 [Jatropha curcas]
20 Hb_007101_210 0.2374740439 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_107201_010 Hb_107201_010 Hb_000140_190 Hb_000140_190 Hb_107201_010--Hb_000140_190 Hb_029510_110 Hb_029510_110 Hb_107201_010--Hb_029510_110 Hb_001004_100 Hb_001004_100 Hb_107201_010--Hb_001004_100 Hb_061195_010 Hb_061195_010 Hb_107201_010--Hb_061195_010 Hb_012239_080 Hb_012239_080 Hb_107201_010--Hb_012239_080 Hb_000471_080 Hb_000471_080 Hb_107201_010--Hb_000471_080 Hb_000748_070 Hb_000748_070 Hb_000140_190--Hb_000748_070 Hb_002057_010 Hb_002057_010 Hb_000140_190--Hb_002057_010 Hb_148435_010 Hb_148435_010 Hb_000140_190--Hb_148435_010 Hb_003392_030 Hb_003392_030 Hb_000140_190--Hb_003392_030 Hb_000140_190--Hb_000471_080 Hb_001104_200 Hb_001104_200 Hb_029510_110--Hb_001104_200 Hb_029510_110--Hb_061195_010 Hb_000204_030 Hb_000204_030 Hb_029510_110--Hb_000204_030 Hb_000563_610 Hb_000563_610 Hb_029510_110--Hb_000563_610 Hb_001366_250 Hb_001366_250 Hb_029510_110--Hb_001366_250 Hb_029510_110--Hb_012239_080 Hb_001123_010 Hb_001123_010 Hb_001004_100--Hb_001123_010 Hb_012753_190 Hb_012753_190 Hb_001004_100--Hb_012753_190 Hb_158092_060 Hb_158092_060 Hb_001004_100--Hb_158092_060 Hb_029904_010 Hb_029904_010 Hb_001004_100--Hb_029904_010 Hb_002849_150 Hb_002849_150 Hb_001004_100--Hb_002849_150 Hb_000653_010 Hb_000653_010 Hb_001004_100--Hb_000653_010 Hb_173448_010 Hb_173448_010 Hb_061195_010--Hb_173448_010 Hb_061195_010--Hb_012239_080 Hb_004055_180 Hb_004055_180 Hb_061195_010--Hb_004055_180 Hb_004195_240 Hb_004195_240 Hb_061195_010--Hb_004195_240 Hb_061195_010--Hb_148435_010 Hb_033363_080 Hb_033363_080 Hb_012239_080--Hb_033363_080 Hb_012239_080--Hb_004055_180 Hb_004712_080 Hb_004712_080 Hb_012239_080--Hb_004712_080 Hb_004774_060 Hb_004774_060 Hb_012239_080--Hb_004774_060 Hb_000471_080--Hb_029510_110 Hb_000614_180 Hb_000614_180 Hb_000471_080--Hb_000614_180 Hb_000471_080--Hb_001366_250 Hb_005000_310 Hb_005000_310 Hb_000471_080--Hb_005000_310 Hb_000471_080--Hb_158092_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0478583 0.195721 1.83643 1.6554 0.0848351 0.0517737
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.21066 1.61383 1.48737 30.5472 4.74665

CAGE analysis