Hb_107221_010

Information

Type -
Description -
Location Contig107221: 5741-10444
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_107221_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_001335_050 0.1131196356 - - -
3 Hb_071130_040 0.2326331275 - - conserved hypothetical protein [Ricinus communis]
4 Hb_124621_010 0.2416367871 - - hypothetical protein L484_019698 [Morus notabilis]
5 Hb_005654_010 0.2537579505 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_057207_010 0.2770455755 - - hypothetical protein F383_17010 [Gossypium arboreum]
7 Hb_178654_020 0.2880900869 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
8 Hb_000375_180 0.2884187589 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
9 Hb_012938_010 0.2981937183 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_018869_020 0.3064636112 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
11 Hb_031474_030 0.306586229 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
12 Hb_011724_030 0.3141348192 - - Organic cation transporter, putative [Ricinus communis]
13 Hb_001366_070 0.3172383303 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 4-like isoform X2 [Jatropha curcas]
14 Hb_000434_020 0.3223928364 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
15 Hb_094852_010 0.3242400681 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
16 Hb_007157_010 0.3257284519 - - -
17 Hb_156924_020 0.3263450008 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
18 Hb_003124_140 0.3287355216 - - hypothetical protein Csa_4G182240 [Cucumis sativus]
19 Hb_139138_010 0.3321874023 - - PREDICTED: uncharacterized protein LOC105650977 [Jatropha curcas]
20 Hb_126044_010 0.3438351344 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]

Gene co-expression network

sample Hb_107221_010 Hb_107221_010 Hb_001335_050 Hb_001335_050 Hb_107221_010--Hb_001335_050 Hb_071130_040 Hb_071130_040 Hb_107221_010--Hb_071130_040 Hb_124621_010 Hb_124621_010 Hb_107221_010--Hb_124621_010 Hb_005654_010 Hb_005654_010 Hb_107221_010--Hb_005654_010 Hb_057207_010 Hb_057207_010 Hb_107221_010--Hb_057207_010 Hb_178654_020 Hb_178654_020 Hb_107221_010--Hb_178654_020 Hb_001335_050--Hb_005654_010 Hb_001335_050--Hb_071130_040 Hb_001335_050--Hb_057207_010 Hb_000375_180 Hb_000375_180 Hb_001335_050--Hb_000375_180 Hb_007064_030 Hb_007064_030 Hb_001335_050--Hb_007064_030 Hb_071130_040--Hb_124621_010 Hb_012938_010 Hb_012938_010 Hb_071130_040--Hb_012938_010 Hb_004656_080 Hb_004656_080 Hb_071130_040--Hb_004656_080 Hb_071130_040--Hb_005654_010 Hb_094852_010 Hb_094852_010 Hb_124621_010--Hb_094852_010 Hb_065858_010 Hb_065858_010 Hb_124621_010--Hb_065858_010 Hb_124621_010--Hb_012938_010 Hb_124621_010--Hb_178654_020 Hb_031474_030 Hb_031474_030 Hb_124621_010--Hb_031474_030 Hb_005654_010--Hb_000375_180 Hb_005654_010--Hb_012938_010 Hb_104721_010 Hb_104721_010 Hb_005654_010--Hb_104721_010 Hb_126044_010 Hb_126044_010 Hb_057207_010--Hb_126044_010 Hb_057207_010--Hb_005654_010 Hb_057207_010--Hb_007064_030 Hb_001623_600 Hb_001623_600 Hb_057207_010--Hb_001623_600 Hb_178654_020--Hb_094852_010 Hb_156924_020 Hb_156924_020 Hb_178654_020--Hb_156924_020 Hb_000757_090 Hb_000757_090 Hb_178654_020--Hb_000757_090 Hb_178654_020--Hb_065858_010 Hb_178654_020--Hb_012938_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0075348 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0207654 0.0245127 0 0.00323573 0.0175193

CAGE analysis