Hb_107373_010

Information

Type -
Description -
Location Contig107373: 11996-12847
Sequence    

Annotation

kegg
ID pop:POPTR_0004s18310g
description hypothetical protein
nr
ID XP_012081816.1
description PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
swissprot
ID O81360
description Zeaxanthin epoxidase, chloroplastic OS=Prunus armeniaca PE=2 SV=1
trembl
ID A0A067K3S0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18850 PE=4 SV=1
Gene Ontology
ID GO:0009523
description zeaxanthin chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_107373_010 0.0 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
2 Hb_001338_130 0.0618821631 - - hypothetical protein MTR_4g129340 [Medicago truncatula]
3 Hb_025325_010 0.0974040172 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
4 Hb_002609_140 0.0979395677 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_005649_060 0.1059457179 - - PREDICTED: uncharacterized protein LOC105644161 [Jatropha curcas]
6 Hb_000115_020 0.1067133642 transcription factor TF Family: C2C2-CO-like zinc finger family protein [Populus trichocarpa]
7 Hb_000307_150 0.1081945589 - - PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
8 Hb_117807_020 0.108297867 - - methyltransferase, putative [Ricinus communis]
9 Hb_002871_180 0.1087331946 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
10 Hb_006901_020 0.1127917505 - - PREDICTED: guard cell S-type anion channel SLAC1 [Jatropha curcas]
11 Hb_011930_060 0.1135378066 - - nitrate transporter, putative [Ricinus communis]
12 Hb_001892_080 0.1184238463 - - Clavata3/esr-related 16, putative [Theobroma cacao]
13 Hb_107647_010 0.1191742806 - - PREDICTED: uncharacterized protein ycf39 [Jatropha curcas]
14 Hb_001621_090 0.1211387478 - - hypothetical protein POPTR_0010s20810g [Populus trichocarpa]
15 Hb_000227_180 0.1222511783 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
16 Hb_000450_050 0.1228901274 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
17 Hb_001416_130 0.1230868373 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000039_210 0.1243522753 - - PREDICTED: uncharacterized protein LOC105649449 [Jatropha curcas]
19 Hb_005433_020 0.126915768 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
20 Hb_004712_220 0.1269277634 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_107373_010 Hb_107373_010 Hb_001338_130 Hb_001338_130 Hb_107373_010--Hb_001338_130 Hb_025325_010 Hb_025325_010 Hb_107373_010--Hb_025325_010 Hb_002609_140 Hb_002609_140 Hb_107373_010--Hb_002609_140 Hb_005649_060 Hb_005649_060 Hb_107373_010--Hb_005649_060 Hb_000115_020 Hb_000115_020 Hb_107373_010--Hb_000115_020 Hb_000307_150 Hb_000307_150 Hb_107373_010--Hb_000307_150 Hb_001338_130--Hb_025325_010 Hb_006901_020 Hb_006901_020 Hb_001338_130--Hb_006901_020 Hb_000227_180 Hb_000227_180 Hb_001338_130--Hb_000227_180 Hb_160045_010 Hb_160045_010 Hb_001338_130--Hb_160045_010 Hb_011930_060 Hb_011930_060 Hb_001338_130--Hb_011930_060 Hb_001621_090 Hb_001621_090 Hb_025325_010--Hb_001621_090 Hb_025325_010--Hb_160045_010 Hb_005000_120 Hb_005000_120 Hb_025325_010--Hb_005000_120 Hb_006665_020 Hb_006665_020 Hb_025325_010--Hb_006665_020 Hb_025325_010--Hb_006901_020 Hb_005977_040 Hb_005977_040 Hb_002609_140--Hb_005977_040 Hb_000544_070 Hb_000544_070 Hb_002609_140--Hb_000544_070 Hb_002249_090 Hb_002249_090 Hb_002609_140--Hb_002249_090 Hb_004306_090 Hb_004306_090 Hb_002609_140--Hb_004306_090 Hb_107647_010 Hb_107647_010 Hb_002609_140--Hb_107647_010 Hb_117807_020 Hb_117807_020 Hb_002609_140--Hb_117807_020 Hb_002871_180 Hb_002871_180 Hb_005649_060--Hb_002871_180 Hb_001766_160 Hb_001766_160 Hb_005649_060--Hb_001766_160 Hb_005649_060--Hb_000115_020 Hb_004712_220 Hb_004712_220 Hb_005649_060--Hb_004712_220 Hb_000445_270 Hb_000445_270 Hb_005649_060--Hb_000445_270 Hb_001006_150 Hb_001006_150 Hb_005649_060--Hb_001006_150 Hb_000937_010 Hb_000937_010 Hb_000115_020--Hb_000937_010 Hb_000809_190 Hb_000809_190 Hb_000115_020--Hb_000809_190 Hb_000115_020--Hb_000445_270 Hb_000115_020--Hb_004712_220 Hb_001751_050 Hb_001751_050 Hb_000115_020--Hb_001751_050 Hb_000116_090 Hb_000116_090 Hb_000307_150--Hb_000116_090 Hb_001892_080 Hb_001892_080 Hb_000307_150--Hb_001892_080 Hb_000307_150--Hb_002871_180 Hb_000334_010 Hb_000334_010 Hb_000307_150--Hb_000334_010 Hb_001269_030 Hb_001269_030 Hb_000307_150--Hb_001269_030 Hb_007477_060 Hb_007477_060 Hb_000307_150--Hb_007477_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.074563 4.64793 34.2445 3.87246 0.314983 0.662179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.172437 0 0 0.138165 55.172

CAGE analysis