Hb_107847_010

Information

Type -
Description -
Location Contig107847: 66-2355
Sequence    

Annotation

kegg
ID rcu:RCOM_1217310
description 3-isopropylmalate dehydratase, putative (EC:4.2.1.33)
nr
ID XP_002528344.1
description 3-isopropylmalate dehydratase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SQS5
description 3-isopropylmalate dehydratase, putative OS=Ricinus communis GN=RCOM_1217310 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_107847_010 0.0 - - 3-isopropylmalate dehydratase, putative [Ricinus communis]
2 Hb_000996_180 0.1190189837 - - PREDICTED: tetraspanin-10 [Jatropha curcas]
3 Hb_089889_020 0.132533075 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At2g36080-like [Jatropha curcas]
4 Hb_009838_130 0.1342585647 - - hypothetical protein CISIN_1g010403mg [Citrus sinensis]
5 Hb_000504_170 0.1375822851 - - hypothetical protein B456_006G033900 [Gossypium raimondii]
6 Hb_009693_030 0.1443853396 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000264_060 0.1444211802 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]
8 Hb_001473_190 0.1461449649 - - 50S ribosomal protein L20 [Hevea brasiliensis]
9 Hb_000093_130 0.1465854043 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
10 Hb_074683_020 0.1467198342 - - PREDICTED: 60S ribosomal protein L27-3 [Jatropha curcas]
11 Hb_001922_130 0.1515988145 - - hypothetical protein PHAVU_002G294300g [Phaseolus vulgaris]
12 Hb_001348_140 0.1532013689 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000258_320 0.1548644971 - - -
14 Hb_000116_570 0.1557184057 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
15 Hb_001227_110 0.15934481 - - U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]
16 Hb_010883_080 0.1664424682 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
17 Hb_003813_200 0.1666069853 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
18 Hb_063409_020 0.1679701372 - - Calcium-binding protein, putative [Ricinus communis]
19 Hb_002411_180 0.1694856484 - - PREDICTED: THO complex subunit 1 isoform X1 [Jatropha curcas]
20 Hb_000566_140 0.1725415245 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 16 [Jatropha curcas]

Gene co-expression network

sample Hb_107847_010 Hb_107847_010 Hb_000996_180 Hb_000996_180 Hb_107847_010--Hb_000996_180 Hb_089889_020 Hb_089889_020 Hb_107847_010--Hb_089889_020 Hb_009838_130 Hb_009838_130 Hb_107847_010--Hb_009838_130 Hb_000504_170 Hb_000504_170 Hb_107847_010--Hb_000504_170 Hb_009693_030 Hb_009693_030 Hb_107847_010--Hb_009693_030 Hb_000264_060 Hb_000264_060 Hb_107847_010--Hb_000264_060 Hb_000996_180--Hb_089889_020 Hb_000996_180--Hb_009693_030 Hb_000152_670 Hb_000152_670 Hb_000996_180--Hb_000152_670 Hb_000996_180--Hb_009838_130 Hb_002411_180 Hb_002411_180 Hb_000996_180--Hb_002411_180 Hb_089889_020--Hb_009838_130 Hb_007123_070 Hb_007123_070 Hb_089889_020--Hb_007123_070 Hb_001910_020 Hb_001910_020 Hb_089889_020--Hb_001910_020 Hb_017259_010 Hb_017259_010 Hb_089889_020--Hb_017259_010 Hb_009838_130--Hb_017259_010 Hb_009838_130--Hb_002411_180 Hb_008518_050 Hb_008518_050 Hb_009838_130--Hb_008518_050 Hb_004374_150 Hb_004374_150 Hb_009838_130--Hb_004374_150 Hb_000529_080 Hb_000529_080 Hb_009838_130--Hb_000529_080 Hb_007643_050 Hb_007643_050 Hb_009838_130--Hb_007643_050 Hb_001922_130 Hb_001922_130 Hb_000504_170--Hb_001922_130 Hb_000186_260 Hb_000186_260 Hb_000504_170--Hb_000186_260 Hb_009178_020 Hb_009178_020 Hb_000504_170--Hb_009178_020 Hb_007083_010 Hb_007083_010 Hb_000504_170--Hb_007083_010 Hb_121729_020 Hb_121729_020 Hb_000504_170--Hb_121729_020 Hb_007416_200 Hb_007416_200 Hb_000504_170--Hb_007416_200 Hb_003177_010 Hb_003177_010 Hb_009693_030--Hb_003177_010 Hb_009693_030--Hb_089889_020 Hb_009693_030--Hb_001910_020 Hb_073973_160 Hb_073973_160 Hb_009693_030--Hb_073973_160 Hb_001348_140 Hb_001348_140 Hb_000264_060--Hb_001348_140 Hb_010298_020 Hb_010298_020 Hb_000264_060--Hb_010298_020 Hb_000322_170 Hb_000322_170 Hb_000264_060--Hb_000322_170 Hb_074683_020 Hb_074683_020 Hb_000264_060--Hb_074683_020 Hb_000093_130 Hb_000093_130 Hb_000264_060--Hb_000093_130 Hb_009615_110 Hb_009615_110 Hb_000264_060--Hb_009615_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
70.9691 28.9066 19.3783 11.9575 63.5946 53.4136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.0441 16.674 0.846949 3.53659 1.12224

CAGE analysis