Hb_108090_010

Information

Type -
Description -
Location Contig108090: 793-5413
Sequence    

Annotation

kegg
ID rcu:RCOM_0737410
description hypothetical protein
nr
ID XP_002527560.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FPT1
description Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2
trembl
ID B9SNJ1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0737410 PE=4 SV=1
Gene Ontology
ID GO:0008233
description ubiquitin carboxyl-terminal hydrolase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_108090_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_061700_010 0.0515865515 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Prunus mume]
3 Hb_000227_360 0.0612165306 - - PREDICTED: mavicyanin [Jatropha curcas]
4 Hb_003858_010 0.0727246924 - - xyloglucan endotransglucosylase/hydrolase [Gossypium hirsutum]
5 Hb_005440_040 0.0760815302 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
6 Hb_000130_250 0.0833212731 - - PREDICTED: protein trichome birefringence-like 31 [Jatropha curcas]
7 Hb_000531_030 0.0854554343 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002662_070 0.0861773124 - - hypothetical protein JCGZ_16102 [Jatropha curcas]
9 Hb_001104_060 0.0869882024 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
10 Hb_011344_040 0.0872041816 - - PREDICTED: 21 kDa protein [Jatropha curcas]
11 Hb_142204_010 0.0883942999 - - pyruvate decarboxylase [Saccharum officinarum]
12 Hb_010172_040 0.0896902094 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
13 Hb_000421_040 0.0897159439 - - Peptide transporter, putative [Ricinus communis]
14 Hb_007382_110 0.0969450431 - - PREDICTED: bidirectional sugar transporter N3 [Jatropha curcas]
15 Hb_000172_270 0.0971759804 - - hypothetical protein JCGZ_24087 [Jatropha curcas]
16 Hb_000707_090 0.0978371683 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
17 Hb_138977_010 0.0991679079 - - unnamed protein product [Vitis vinifera]
18 Hb_003376_060 0.0992595793 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9 isoform X1 [Jatropha curcas]
19 Hb_000347_060 0.1006277995 - - PREDICTED: uncharacterized protein LOC105631356 [Jatropha curcas]
20 Hb_001357_290 0.1028108307 - - PREDICTED: uncharacterized protein LOC105632986 [Jatropha curcas]

Gene co-expression network

sample Hb_108090_010 Hb_108090_010 Hb_061700_010 Hb_061700_010 Hb_108090_010--Hb_061700_010 Hb_000227_360 Hb_000227_360 Hb_108090_010--Hb_000227_360 Hb_003858_010 Hb_003858_010 Hb_108090_010--Hb_003858_010 Hb_005440_040 Hb_005440_040 Hb_108090_010--Hb_005440_040 Hb_000130_250 Hb_000130_250 Hb_108090_010--Hb_000130_250 Hb_000531_030 Hb_000531_030 Hb_108090_010--Hb_000531_030 Hb_000421_040 Hb_000421_040 Hb_061700_010--Hb_000421_040 Hb_142204_010 Hb_142204_010 Hb_061700_010--Hb_142204_010 Hb_000172_270 Hb_000172_270 Hb_061700_010--Hb_000172_270 Hb_000557_080 Hb_000557_080 Hb_061700_010--Hb_000557_080 Hb_000707_090 Hb_000707_090 Hb_061700_010--Hb_000707_090 Hb_000227_360--Hb_005440_040 Hb_000227_360--Hb_003858_010 Hb_001456_030 Hb_001456_030 Hb_000227_360--Hb_001456_030 Hb_011344_040 Hb_011344_040 Hb_000227_360--Hb_011344_040 Hb_001357_290 Hb_001357_290 Hb_000227_360--Hb_001357_290 Hb_181908_010 Hb_181908_010 Hb_003858_010--Hb_181908_010 Hb_008008_040 Hb_008008_040 Hb_003858_010--Hb_008008_040 Hb_001454_420 Hb_001454_420 Hb_003858_010--Hb_001454_420 Hb_003858_010--Hb_142204_010 Hb_003858_010--Hb_011344_040 Hb_007113_060 Hb_007113_060 Hb_005440_040--Hb_007113_060 Hb_006922_120 Hb_006922_120 Hb_005440_040--Hb_006922_120 Hb_005440_040--Hb_003858_010 Hb_005440_040--Hb_000531_030 Hb_000130_250--Hb_061700_010 Hb_000130_250--Hb_000227_360 Hb_000130_250--Hb_011344_040 Hb_000130_250--Hb_001357_290 Hb_000347_060 Hb_000347_060 Hb_000130_250--Hb_000347_060 Hb_003376_060 Hb_003376_060 Hb_000130_250--Hb_003376_060 Hb_001104_060 Hb_001104_060 Hb_000531_030--Hb_001104_060 Hb_000531_030--Hb_000227_360 Hb_009151_010 Hb_009151_010 Hb_000531_030--Hb_009151_010 Hb_000531_030--Hb_001456_030 Hb_005116_150 Hb_005116_150 Hb_000531_030--Hb_005116_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0371627 0.273257 1.42489 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.773005

CAGE analysis