Hb_108216_030

Information

Type -
Description -
Location Contig108216: 33344-35656
Sequence    

Annotation

kegg
ID rcu:RCOM_1588040
description Xylem serine proteinase 1 precursor, putative (EC:3.4.21.25)
nr
ID XP_002510119.1
description Xylem serine proteinase 1 precursor, putative [Ricinus communis]
swissprot
ID O65351
description Subtilisin-like protease SBT1.7 OS=Arabidopsis thaliana GN=SBT1.7 PE=1 SV=1
trembl
ID B9R726
description Xylem serine proteinase 1, putative OS=Ricinus communis GN=RCOM_1588040 PE=4 SV=1
Gene Ontology
ID GO:0004252
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_108216_030 0.0 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
2 Hb_000365_040 0.1482852533 - - PREDICTED: uncharacterized protein LOC105649097 [Jatropha curcas]
3 Hb_003952_080 0.176101367 - - zinc finger protein, putative [Ricinus communis]
4 Hb_156850_040 0.1761317772 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
5 Hb_009851_040 0.1765058394 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001269_570 0.1863035778 - - hypothetical protein POPTR_0001s03430g [Populus trichocarpa]
7 Hb_001247_080 0.1873621623 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001502_010 0.1889545216 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
9 Hb_000035_510 0.1905329417 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]
10 Hb_000959_180 0.1944143954 - - hypothetical protein JCGZ_09448 [Jatropha curcas]
11 Hb_045786_010 0.1965348283 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
12 Hb_000628_100 0.1996728346 - - hypothetical protein MTR_1g019660 [Medicago truncatula]
13 Hb_002835_120 0.2003795641 - - PREDICTED: uncharacterized protein LOC105640304 [Jatropha curcas]
14 Hb_000245_070 0.2018691215 - - PREDICTED: uncharacterized protein LOC105141276 [Populus euphratica]
15 Hb_032260_040 0.2029273203 - - conserved hypothetical protein [Ricinus communis]
16 Hb_024066_030 0.2031568235 - - PREDICTED: beta-glucosidase 24-like [Jatropha curcas]
17 Hb_011930_090 0.2034036953 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
18 Hb_008200_010 0.2035863282 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
19 Hb_002374_070 0.2038673569 - - amino acid transporter, putative [Ricinus communis]
20 Hb_000206_270 0.2045111835 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_108216_030 Hb_108216_030 Hb_000365_040 Hb_000365_040 Hb_108216_030--Hb_000365_040 Hb_003952_080 Hb_003952_080 Hb_108216_030--Hb_003952_080 Hb_156850_040 Hb_156850_040 Hb_108216_030--Hb_156850_040 Hb_009851_040 Hb_009851_040 Hb_108216_030--Hb_009851_040 Hb_001269_570 Hb_001269_570 Hb_108216_030--Hb_001269_570 Hb_001247_080 Hb_001247_080 Hb_108216_030--Hb_001247_080 Hb_005396_030 Hb_005396_030 Hb_000365_040--Hb_005396_030 Hb_000733_090 Hb_000733_090 Hb_000365_040--Hb_000733_090 Hb_000365_040--Hb_001247_080 Hb_000860_030 Hb_000860_030 Hb_000365_040--Hb_000860_030 Hb_111985_090 Hb_111985_090 Hb_000365_040--Hb_111985_090 Hb_003952_080--Hb_000733_090 Hb_005227_050 Hb_005227_050 Hb_003952_080--Hb_005227_050 Hb_000007_470 Hb_000007_470 Hb_003952_080--Hb_000007_470 Hb_049915_010 Hb_049915_010 Hb_003952_080--Hb_049915_010 Hb_023768_010 Hb_023768_010 Hb_003952_080--Hb_023768_010 Hb_001322_010 Hb_001322_010 Hb_156850_040--Hb_001322_010 Hb_156850_040--Hb_000860_030 Hb_000638_110 Hb_000638_110 Hb_156850_040--Hb_000638_110 Hb_022597_010 Hb_022597_010 Hb_156850_040--Hb_022597_010 Hb_002277_020 Hb_002277_020 Hb_156850_040--Hb_002277_020 Hb_003582_010 Hb_003582_010 Hb_156850_040--Hb_003582_010 Hb_005001_010 Hb_005001_010 Hb_009851_040--Hb_005001_010 Hb_045786_010 Hb_045786_010 Hb_009851_040--Hb_045786_010 Hb_000628_100 Hb_000628_100 Hb_009851_040--Hb_000628_100 Hb_000172_150 Hb_000172_150 Hb_009851_040--Hb_000172_150 Hb_001502_010 Hb_001502_010 Hb_009851_040--Hb_001502_010 Hb_020805_160 Hb_020805_160 Hb_009851_040--Hb_020805_160 Hb_000521_070 Hb_000521_070 Hb_001269_570--Hb_000521_070 Hb_001269_570--Hb_000365_040 Hb_000035_510 Hb_000035_510 Hb_001269_570--Hb_000035_510 Hb_000893_010 Hb_000893_010 Hb_001269_570--Hb_000893_010 Hb_001454_080 Hb_001454_080 Hb_001269_570--Hb_001454_080 Hb_001584_040 Hb_001584_040 Hb_001247_080--Hb_001584_040 Hb_000245_070 Hb_000245_070 Hb_001247_080--Hb_000245_070 Hb_004757_040 Hb_004757_040 Hb_001247_080--Hb_004757_040 Hb_002835_120 Hb_002835_120 Hb_001247_080--Hb_002835_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.653394 6.07866 0.709031 24.1988 1.81284 0.248085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.153839 0.196708 0.11519 0.120246 1.05944

CAGE analysis