Hb_108216_040

Information

Type -
Description -
Location Contig108216: 36942-39969
Sequence    

Annotation

kegg
ID rcu:RCOM_1588050
description hspc200, putative (EC:2.1.1.2)
nr
ID XP_012068252.1
description PREDICTED: protein arginine N-methyltransferase 2 [Jatropha curcas]
swissprot
ID Q10170
description Protein arginine N-methyltransferase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rmt2 PE=3 SV=2
trembl
ID A0A067LAX0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16052 PE=4 SV=1
Gene Ontology
ID GO:0030731
description protein arginine n-methyltransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02523: 37183-39021 , PASA_asmbl_02524: 39082-39911
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_108216_040 0.0 - - PREDICTED: protein arginine N-methyltransferase 2 [Jatropha curcas]
2 Hb_000100_070 0.0549441553 - - PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Jatropha curcas]
3 Hb_000640_320 0.0595973294 - - PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
4 Hb_008143_030 0.0646297558 - - PREDICTED: uncharacterized protein LOC105650295 isoform X2 [Jatropha curcas]
5 Hb_000207_310 0.0705782163 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
6 Hb_000116_180 0.0712126009 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
7 Hb_002400_180 0.0716185358 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000184_110 0.0753326652 - - hypothetical protein F383_18769 [Gossypium arboreum]
9 Hb_003581_120 0.0812941706 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
10 Hb_000320_200 0.0829019031 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
11 Hb_000714_050 0.0831075115 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
12 Hb_001235_200 0.0843185802 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002527_030 0.0844125191 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like [Jatropha curcas]
14 Hb_000803_300 0.0844338728 - - nuclear movement protein nudc, putative [Ricinus communis]
15 Hb_002174_060 0.0846262341 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
16 Hb_000093_080 0.0848679898 - - hypothetical protein POPTR_0008s09730g [Populus trichocarpa]
17 Hb_000345_170 0.085759623 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
18 Hb_009265_080 0.0859360955 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
19 Hb_002043_170 0.0871730518 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
20 Hb_002007_350 0.0882999323 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_108216_040 Hb_108216_040 Hb_000100_070 Hb_000100_070 Hb_108216_040--Hb_000100_070 Hb_000640_320 Hb_000640_320 Hb_108216_040--Hb_000640_320 Hb_008143_030 Hb_008143_030 Hb_108216_040--Hb_008143_030 Hb_000207_310 Hb_000207_310 Hb_108216_040--Hb_000207_310 Hb_000116_180 Hb_000116_180 Hb_108216_040--Hb_000116_180 Hb_002400_180 Hb_002400_180 Hb_108216_040--Hb_002400_180 Hb_002798_040 Hb_002798_040 Hb_000100_070--Hb_002798_040 Hb_007590_080 Hb_007590_080 Hb_000100_070--Hb_007590_080 Hb_000100_070--Hb_002400_180 Hb_000100_070--Hb_000640_320 Hb_002007_350 Hb_002007_350 Hb_000100_070--Hb_002007_350 Hb_002043_170 Hb_002043_170 Hb_000640_320--Hb_002043_170 Hb_000640_320--Hb_008143_030 Hb_000714_050 Hb_000714_050 Hb_000640_320--Hb_000714_050 Hb_000640_320--Hb_002400_180 Hb_000343_210 Hb_000343_210 Hb_000640_320--Hb_000343_210 Hb_001584_290 Hb_001584_290 Hb_008143_030--Hb_001584_290 Hb_000035_040 Hb_000035_040 Hb_008143_030--Hb_000035_040 Hb_000104_080 Hb_000104_080 Hb_008143_030--Hb_000104_080 Hb_002652_040 Hb_002652_040 Hb_008143_030--Hb_002652_040 Hb_001828_160 Hb_001828_160 Hb_000207_310--Hb_001828_160 Hb_000207_310--Hb_000116_180 Hb_002890_020 Hb_002890_020 Hb_000207_310--Hb_002890_020 Hb_000913_050 Hb_000913_050 Hb_000207_310--Hb_000913_050 Hb_000029_130 Hb_000029_130 Hb_000207_310--Hb_000029_130 Hb_000116_180--Hb_000913_050 Hb_000794_050 Hb_000794_050 Hb_000116_180--Hb_000794_050 Hb_000926_190 Hb_000926_190 Hb_000116_180--Hb_000926_190 Hb_003849_250 Hb_003849_250 Hb_000116_180--Hb_003849_250 Hb_000866_470 Hb_000866_470 Hb_000116_180--Hb_000866_470 Hb_003581_120 Hb_003581_120 Hb_002400_180--Hb_003581_120 Hb_000684_420 Hb_000684_420 Hb_002400_180--Hb_000684_420 Hb_004678_060 Hb_004678_060 Hb_002400_180--Hb_004678_060 Hb_000803_300 Hb_000803_300 Hb_002400_180--Hb_000803_300 Hb_002097_090 Hb_002097_090 Hb_002400_180--Hb_002097_090 Hb_000034_050 Hb_000034_050 Hb_002400_180--Hb_000034_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.8178 11.7484 6.55423 6.50432 29.2776 25.7602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.7444 13.5221 11.3835 10.9308 12.5431

CAGE analysis