Hb_108329_020

Information

Type transcription factor
Description TF Family: EIL
Location Contig108329: 14940-16796
Sequence    

Annotation

kegg
ID rcu:RCOM_0656830
description ETHYLENE-INSENSITIVE3 protein, putative
nr
ID XP_002530192.1
description ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
swissprot
ID O24606
description Protein ETHYLENE INSENSITIVE 3 OS=Arabidopsis thaliana GN=EIN3 PE=1 SV=1
trembl
ID B9SW23
description ETHYLENE-INSENSITIVE3 protein, putative OS=Ricinus communis GN=RCOM_0656830 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein ethylene insensitive 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02539: 14460-17942 , PASA_asmbl_02540: 17265-17642
cDNA
(Sanger)
(ID:Location)		 029_B19.ab1: 17672-17897 , 037_F13.ab1: 16447-17942

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_108329_020 0.0 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
2 Hb_004993_060 0.1112279659 - - -
3 Hb_109002_020 0.1186491063 - - PREDICTED: CTP synthase-like [Jatropha curcas]
4 Hb_007044_050 0.1191009409 - - PREDICTED: putative endo-1,3(4)-beta-glucanase 2 [Jatropha curcas]
5 Hb_001486_030 0.1333896669 - - conserved hypothetical protein [Ricinus communis]
6 Hb_008770_040 0.1366871635 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Malus domestica]
7 Hb_002311_340 0.1405924666 - - phospholipase d zeta, putative [Ricinus communis]
8 Hb_000076_140 0.1409416128 - - PREDICTED: glucose-6-phosphate/phosphate translocator 1, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_001214_090 0.1416448054 - - PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal [Jatropha curcas]
10 Hb_043485_010 0.1418244084 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X2 [Jatropha curcas]
11 Hb_001341_100 0.1464896394 - - hypothetical protein JCGZ_05568 [Jatropha curcas]
12 Hb_000340_390 0.1500082738 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
13 Hb_008147_070 0.1500502656 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
14 Hb_005305_050 0.1509246248 - - PREDICTED: armadillo repeat-containing protein 8 [Jatropha curcas]
15 Hb_005433_060 0.1511416933 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C [Jatropha curcas]
16 Hb_001246_030 0.1518074811 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
17 Hb_031910_020 0.1522434482 - - PREDICTED: exocyst complex component SEC15A [Jatropha curcas]
18 Hb_172632_110 0.1527679383 - - PREDICTED: pumilio homolog 5 [Jatropha curcas]
19 Hb_004449_080 0.1532849021 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
20 Hb_003847_030 0.1539414681 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_108329_020 Hb_108329_020 Hb_004993_060 Hb_004993_060 Hb_108329_020--Hb_004993_060 Hb_109002_020 Hb_109002_020 Hb_108329_020--Hb_109002_020 Hb_007044_050 Hb_007044_050 Hb_108329_020--Hb_007044_050 Hb_001486_030 Hb_001486_030 Hb_108329_020--Hb_001486_030 Hb_008770_040 Hb_008770_040 Hb_108329_020--Hb_008770_040 Hb_002311_340 Hb_002311_340 Hb_108329_020--Hb_002311_340 Hb_031910_020 Hb_031910_020 Hb_004993_060--Hb_031910_020 Hb_000549_040 Hb_000549_040 Hb_004993_060--Hb_000549_040 Hb_004993_060--Hb_007044_050 Hb_000603_080 Hb_000603_080 Hb_004993_060--Hb_000603_080 Hb_023771_010 Hb_023771_010 Hb_004993_060--Hb_023771_010 Hb_000152_320 Hb_000152_320 Hb_004993_060--Hb_000152_320 Hb_000175_540 Hb_000175_540 Hb_109002_020--Hb_000175_540 Hb_000504_070 Hb_000504_070 Hb_109002_020--Hb_000504_070 Hb_004064_010 Hb_004064_010 Hb_109002_020--Hb_004064_010 Hb_000103_270 Hb_000103_270 Hb_109002_020--Hb_000103_270 Hb_000621_020 Hb_000621_020 Hb_109002_020--Hb_000621_020 Hb_003266_100 Hb_003266_100 Hb_109002_020--Hb_003266_100 Hb_010344_050 Hb_010344_050 Hb_007044_050--Hb_010344_050 Hb_001352_020 Hb_001352_020 Hb_007044_050--Hb_001352_020 Hb_000505_150 Hb_000505_150 Hb_007044_050--Hb_000505_150 Hb_001898_080 Hb_001898_080 Hb_007044_050--Hb_001898_080 Hb_007386_040 Hb_007386_040 Hb_007044_050--Hb_007386_040 Hb_028811_010 Hb_028811_010 Hb_001486_030--Hb_028811_010 Hb_001341_100 Hb_001341_100 Hb_001486_030--Hb_001341_100 Hb_001486_030--Hb_004064_010 Hb_001486_030--Hb_109002_020 Hb_119494_010 Hb_119494_010 Hb_001486_030--Hb_119494_010 Hb_003442_070 Hb_003442_070 Hb_001486_030--Hb_003442_070 Hb_172632_110 Hb_172632_110 Hb_008770_040--Hb_172632_110 Hb_003373_030 Hb_003373_030 Hb_008770_040--Hb_003373_030 Hb_001268_110 Hb_001268_110 Hb_008770_040--Hb_001268_110 Hb_000866_170 Hb_000866_170 Hb_008770_040--Hb_000866_170 Hb_000245_040 Hb_000245_040 Hb_008770_040--Hb_000245_040 Hb_001171_060 Hb_001171_060 Hb_008770_040--Hb_001171_060 Hb_003847_030 Hb_003847_030 Hb_002311_340--Hb_003847_030 Hb_002311_340--Hb_000504_070 Hb_028227_070 Hb_028227_070 Hb_002311_340--Hb_028227_070 Hb_002311_340--Hb_109002_020 Hb_001414_030 Hb_001414_030 Hb_002311_340--Hb_001414_030 Hb_142343_010 Hb_142343_010 Hb_002311_340--Hb_142343_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
77.9626 306.622 64.3741 221.333 100.536 161.696
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
205.783 269.705 500.23 584.892 233.915

CAGE analysis