Hb_108350_010

Information

Type -
Description -
Location Contig108350: 6425-20119
Sequence    

Annotation

kegg
ID rcu:RCOM_1241400
description GTP-binding protein erg, putative
nr
ID XP_002516653.1
description GTP-binding protein erg, putative [Ricinus communis]
swissprot
ID O82653
description GTP-binding protein ERG OS=Arabidopsis thaliana GN=ERG PE=1 SV=2
trembl
ID B9RSD4
description GTP-binding protein erg, putative OS=Ricinus communis GN=RCOM_1241400 PE=3 SV=1
Gene Ontology
ID GO:0005829
description gtp-binding protein erg

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02542: 6869-14146 , PASA_asmbl_02544: 17955-20140
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_108350_010 0.0 - - GTP-binding protein erg, putative [Ricinus communis]
2 Hb_000976_170 0.0492785353 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
3 Hb_000085_050 0.0653505458 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_000120_460 0.0728028354 - - PREDICTED: thioredoxin reductase NTRB-like [Jatropha curcas]
5 Hb_002183_090 0.0737288284 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
6 Hb_058999_020 0.0744151342 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
7 Hb_000092_170 0.0773806243 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
8 Hb_127552_030 0.0778481256 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
9 Hb_000227_080 0.0795931283 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003525_010 0.0819964362 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
11 Hb_000120_470 0.0821088908 - - hypothetical protein VITISV_017372 [Vitis vinifera]
12 Hb_025240_040 0.0845693707 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
13 Hb_000139_290 0.0848183381 - - PREDICTED: peroxisomal adenine nucleotide carrier 1-like isoform X1 [Jatropha curcas]
14 Hb_033834_040 0.085953198 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005725_270 0.0885690548 - - PREDICTED: uncharacterized protein LOC105630802 isoform X1 [Jatropha curcas]
16 Hb_155159_030 0.0891770815 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
17 Hb_001006_190 0.0895627387 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
18 Hb_000317_240 0.0906145539 - - PREDICTED: protein DYAD [Jatropha curcas]
19 Hb_002182_080 0.0920651889 - - 3-5 exonuclease, putative [Ricinus communis]
20 Hb_002044_080 0.0921034373 - - PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_108350_010 Hb_108350_010 Hb_000976_170 Hb_000976_170 Hb_108350_010--Hb_000976_170 Hb_000085_050 Hb_000085_050 Hb_108350_010--Hb_000085_050 Hb_000120_460 Hb_000120_460 Hb_108350_010--Hb_000120_460 Hb_002183_090 Hb_002183_090 Hb_108350_010--Hb_002183_090 Hb_058999_020 Hb_058999_020 Hb_108350_010--Hb_058999_020 Hb_000092_170 Hb_000092_170 Hb_108350_010--Hb_000092_170 Hb_000976_170--Hb_000120_460 Hb_000976_170--Hb_002183_090 Hb_000976_170--Hb_000085_050 Hb_025240_040 Hb_025240_040 Hb_000976_170--Hb_025240_040 Hb_127552_030 Hb_127552_030 Hb_000976_170--Hb_127552_030 Hb_000085_050--Hb_002183_090 Hb_005618_170 Hb_005618_170 Hb_000085_050--Hb_005618_170 Hb_000085_050--Hb_058999_020 Hb_000107_330 Hb_000107_330 Hb_000085_050--Hb_000107_330 Hb_000120_460--Hb_025240_040 Hb_004218_110 Hb_004218_110 Hb_000120_460--Hb_004218_110 Hb_003697_040 Hb_003697_040 Hb_000120_460--Hb_003697_040 Hb_001545_170 Hb_001545_170 Hb_000120_460--Hb_001545_170 Hb_000384_100 Hb_000384_100 Hb_002183_090--Hb_000384_100 Hb_033834_040 Hb_033834_040 Hb_002183_090--Hb_033834_040 Hb_002044_080 Hb_002044_080 Hb_002183_090--Hb_002044_080 Hb_000251_130 Hb_000251_130 Hb_002183_090--Hb_000251_130 Hb_000757_060 Hb_000757_060 Hb_058999_020--Hb_000757_060 Hb_005779_060 Hb_005779_060 Hb_058999_020--Hb_005779_060 Hb_000227_080 Hb_000227_080 Hb_058999_020--Hb_000227_080 Hb_000215_110 Hb_000215_110 Hb_058999_020--Hb_000215_110 Hb_000465_460 Hb_000465_460 Hb_058999_020--Hb_000465_460 Hb_058999_020--Hb_002044_080 Hb_003525_010 Hb_003525_010 Hb_000092_170--Hb_003525_010 Hb_044728_010 Hb_044728_010 Hb_000092_170--Hb_044728_010 Hb_000092_170--Hb_000107_330 Hb_011485_070 Hb_011485_070 Hb_000092_170--Hb_011485_070 Hb_002078_350 Hb_002078_350 Hb_000092_170--Hb_002078_350 Hb_009767_110 Hb_009767_110 Hb_000092_170--Hb_009767_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.64373 2.00059 2.37716 2.38177 3.55289 5.85847
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.91602 7.08843 4.57853 5.28538 2.96234

CAGE analysis